Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00322
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887...    27   2.5  
10_07_0003 - 11720435-11720950,11721621-11721827                       26   4.4  
09_04_0445 - 17677126-17677512,17677608-17678564                       26   5.8  
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474...    25   7.7  

>05_05_0114 -
           22488172-22488279,22488414-22488511,22488616-22488784,
           22489310-22489377,22490485-22490521,22490660-22490741,
           22490845-22490903
          Length = 206

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 128 LCHINSKSVTIHLDGGFYLYICDELSAFTAEWLVFHHGEC 9
           LC  N KS++   +   Y Y C  + +FTA  +VF  G+C
Sbjct: 66  LCSDNLKSLSTMANISQY-YCCLPVPSFTALLMVFFPGDC 104


>10_07_0003 - 11720435-11720950,11721621-11721827
          Length = 240

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 134 YNLCHINSKSVTIHLDGGFYLYICDELSAFTAEW 33
           ++LC I  +  T+ +  G   Y C E  A T EW
Sbjct: 170 WDLCKITRRMDTLDIQTGEIQYNCTEHIAQTQEW 203


>09_04_0445 - 17677126-17677512,17677608-17678564
          Length = 447

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 41  AEWLVFHHGECRI 3
           A W +FHHGE R+
Sbjct: 180 ARWALFHHGEVRL 192


>06_03_0541 -
           21944696-21944851,21944939-21945142,21945438-21947472,
           21947644-21947720,21948289-21948477,21949188-21949448,
           21949527-21949632,21951330-21951517,21951814-21951971,
           21952015-21952840,21952947-21953210
          Length = 1487

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 214 NCASDNMKIICNVSTNCTSTLKKKK 288
           +C+ D  ++I N +TNCT  LK+ K
Sbjct: 891 SCSID--RVIQNATTNCTEHLKESK 913


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,215,106
Number of Sequences: 37544
Number of extensions: 83884
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)