Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00322
         (292 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   0.44 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   3.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   5.4  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 213 LCFTVALSDFMIFLLIPTLIHYT 145
           LC  + LS  M FLLI  +I  T
Sbjct: 269 LCINILLSQTMFFLLISEIIPST 291


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 210 CFTVALSDFMIFLLI 166
           C T+  + F++F+L+
Sbjct: 79  CMTITFASFLLFILL 93


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 56 IHHKYINKIPHRDV 97
          +HH + N + HRD+
Sbjct: 22 VHHCHHNGVVHRDL 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,994
Number of Sequences: 438
Number of extensions: 977
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)