Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00322
         (292 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    26   3.8  
At1g77380.1 68414.m09011 amino acid carrier, putative / amino ac...    26   5.0  
At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) ...    25   6.6  
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    25   8.8  

>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 226 DNMKIICNVSTNCTSTLKKKK 288
           DNM+ +  V T+CT  +KKK+
Sbjct: 294 DNMQYVKQVFTSCTDLVKKKQ 314


>At1g77380.1 68414.m09011 amino acid carrier, putative / amino acid
           permease, putative strong similarity to amino acid
           carrier GI:3293031 from [Ricinus communis]; contains
           Pfam profile PF01490: Transmembrane amino acid
           transporter protein; identical to cDNA AAP3 (Amino Acid
           Permease) GI:3970651
          Length = 476

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 140 NSYNLCHINSKSVTIHLDGGFYLYICDELSAF 45
           N Y L  I + ++ IHL G + +Y C  L AF
Sbjct: 314 NPYWLLDIANAAIVIHLIGAYQVY-CQPLFAF 344


>At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5)
           nearly identical to amino acid permease (AAP5) GI:608673
           from [Arabidopsis thaliana]
          Length = 480

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 140 NSYNLCHINSKSVTIHLDGGFYLYICDELSAF 45
           N Y L  I + ++ IHL G + +Y C  L AF
Sbjct: 318 NPYWLLDIANLAIVIHLVGAYQVY-CQPLFAF 348


>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 226 DNMKIICNVSTNCTSTLKKKK 288
           DN + +  V T+CT  LKKK+
Sbjct: 268 DNTQYVKQVFTSCTDLLKKKQ 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,217,564
Number of Sequences: 28952
Number of extensions: 73772
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)