Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00321X
         (549 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    27   0.11 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.33 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 22  WTSADF-CTNYTCADLHGT-LQVQSSNETCPEVSEAVKKQFVLKEEKIPGKCC 174
           WTS+D  CT   C + +     ++    TCP+          +K EK+PG+CC
Sbjct: 686 WTSSDNPCTTCFCENGNNKCFTMECPQVTCPDN---------MKLEKVPGECC 729


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +3

Query: 144  QRGEDPGQ-VLSQGRAGRVSRWRQNISGGSGVDDAGPVTNRTCRREDGQLSVGRTVEHCE 320
            ++G DPG+ V+     G+          G      GP       R  G L+     E CE
Sbjct: 2551 EKGADPGKIVMGMPLYGQSFSLADAADRGLNAKSYGPGEAGEFTRAGGFLAY---YEICE 2607

Query: 321  RQCRRGWT 344
            R  +RGWT
Sbjct: 2608 RVKKRGWT 2615


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/51 (25%), Positives = 19/51 (37%)
 Frame = -3

Query: 232 PEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQPPTLQDKSRLSFAL 80
           P PP ++  H       P     P   PL    ++  PP  Q +  L+  L
Sbjct: 163 PPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPPVTQTQLPLNLGL 213


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 522 SGQCSWLTSRTPPP 481
           + QC+ L++++PPP
Sbjct: 41  AAQCNKLSNKSPPP 54


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 142 LKEEKIPGKCC 174
           +K +++PG CC
Sbjct: 327 MKPKEVPGPCC 337


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,499
Number of Sequences: 336
Number of extensions: 2109
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)