Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00321X
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    30   0.20 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   3.2  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    26   3.2  
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    25   5.6  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   5.6  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   7.3  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   9.7  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    25   9.7  

>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 133 VSSQPPTLQDKSRLSFALVGSRAGRRRCSWCRS 35
           VS++ PT +  ++  +++VGS +G + C W +S
Sbjct: 295 VSTESPTYKALTKQGYSVVGSHSGVKICRWTKS 327


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 223 PDIFCRHLDTRPARPWDSTCPGSSPL 146
           PDI C +L  RP    DS  PG + L
Sbjct: 79  PDIHCNNLSKRPVGFTDSYVPGEALL 104


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 387 QSACLVDDQLKEXGSKWSSADNCTTFSC 470
           QS C   D  +  G K S+ DNC   SC
Sbjct: 18  QSKCGCQDCKESCGCKSSAVDNCKCSSC 45


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 218 YILSPSRHATGSTLGQHLPGIFSSLSTNCFFTASDTSGQV 99
           Y+  PS+ A G   G   P I +S++TN    ASD   Q+
Sbjct: 77  YVFVPSKAALGRACGVSRPVISASITTN---EASDLLPQI 113


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 305 RAAHRQLPVLPPARPVGHGSGVVHT*TS*YILSP 204
           RA   Q  +LPP +  GHGS + +   S ++ +P
Sbjct: 197 RARISQFVILPPFQHQGHGSQLYNAIVSTFLKNP 230


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 40  CTNYTCADLHGTLQVQSSNET 102
           CTNYTC D   T   ++++ T
Sbjct: 136 CTNYTCFDYSSTTARRTNSST 156


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 97  ETCPEVSEAVKKQFVLKEEKIPGKC 171
           E  P++S A K++  +KE  +  KC
Sbjct: 112 EKAPQISSAAKRKSFIKERGMLAKC 136


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 476 SVAAERGAVVGRGPLGAXFL 417
           SV  +RGA+VGR  LGA  L
Sbjct: 142 SVGKKRGALVGRRGLGATVL 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,046
Number of Sequences: 5004
Number of extensions: 34085
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)