Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00321X
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52104| Best HMM Match : FRG1 (HMM E-Value=3.3) 31 0.47
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10) 31 0.62
SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 31 0.82
SB_58061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 1.9
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09) 29 2.5
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_32670| Best HMM Match : CIMR (HMM E-Value=0) 29 3.3
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2) 29 3.3
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 28 4.4
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 28 4.4
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_18624| Best HMM Match : EGF (HMM E-Value=7.8e-06) 28 5.8
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_23961| Best HMM Match : Pentaxin (HMM E-Value=5.5e-08) 27 7.6
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_12395| Best HMM Match : FG-GAP (HMM E-Value=7e-07) 27 7.6
>SB_52104| Best HMM Match : FRG1 (HMM E-Value=3.3)
Length = 275
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 70 GTLQVQSSNETCPEVSEAVKKQFVLKEEKIPGKCC 174
G+L+ + TCPE+ + L EE++P +CC
Sbjct: 238 GSLEAREDRNTCPEMVFEMITLNDLDEERVPSQCC 272
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 328 HCRSQCSTVRPTDSCPSSRLHVRLVTGPASSTPEPPDIFCRHLDTRPARP 179
HC C P CP+S HV ++ + PE +C D RP P
Sbjct: 2109 HCEKSCEPDCPIRCCPNSPRHVSIIVN-SEPKPESCPSYCSK-DCRPPCP 2156
>SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)
Length = 219
Score = 31.1 bits (67), Expect = 0.62
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = -3
Query: 355 GGEYVQPRRHCRSQCSTVRPTDSCPSSRLHVRLVTGPASSTPEPPDIFCRHLD 197
GG YV P R +Q S+++P D C SS L R IFC LD
Sbjct: 76 GGYYVLPTRPQSNQ-SSIKPVDKCTSSYLLRRRPQKQLCKNGSRRRIFCEVLD 127
>SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 303 TVEHCERQCRRGWTYSPPAADHCXGRCVQSACLVDD 410
TV C + G++ P A HC G C QS L DD
Sbjct: 286 TVRPCSQCNHLGFSQDPDEASHCSGECCQS--LFDD 319
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 30.7 bits (66), Expect = 0.82
Identities = 23/87 (26%), Positives = 33/87 (37%)
Frame = -3
Query: 409 SSTRQADCTQRPXQWSAAGGEYVQPRRHCRSQCSTVRPTDSCPSSRLHVRLVTGPASSTP 230
+S+ D T Q S+ G + S T SS + T P +S+P
Sbjct: 185 TSSTVGDTTSTKPQTSSPIGPTTSTQHQTSSAICHTTSTQPQTSSTVGHTTSTKPQTSSP 244
Query: 229 EPPDIFCRHLDTRPARPWDSTCPGSSP 149
P +H + P P ST P +SP
Sbjct: 245 IGPTTSTQHQTSSPIGPTTSTQPQTSP 271
>SB_58061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 129 ETVRAQRGEDPGQVLSQGRAGRVSRWRQNISGGSGVDDAGPVTNRTCRR 275
++VR P +V S+G A R+S WRQ GGS G R+ RR
Sbjct: 289 KSVRVTIDGMPNKVFSRGCAPRISGWRQR--GGSSAPPRG--AQRSARR 333
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 253 TGPASSTPEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQPPT 113
T PA++TP P T P +P +T PG++ T ++ P T
Sbjct: 96 TPPATTTPTKPTTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPAT 142
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -3
Query: 253 TGPASSTPEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQPPTLQDKSRLSFALVG 74
T PA++TP P T P +P +T P ++ T ++ P T +R L
Sbjct: 138 TPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKSTTTTPPATTTPTTRPLLLLCS 197
Query: 73 SR 68
R
Sbjct: 198 RR 199
>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 64 LHGTLQVQSSNETCPEVSEAVKKQFVLKEEKIPGKCCPKVEP 189
LHG + +S E + E +K F L+ K GK P V+P
Sbjct: 417 LHGLQDIPASTEKASKKPEIRQKVFSLERRKTQGKDRPDVKP 458
>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
Length = 533
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = -3
Query: 304 VRPTDSCPSSRLHVRLVTGPASSTPEPPDIFCRHLD-TRPARPWDSTCPGSSPL*ARTVS 128
V PT P++R + + STP P + LD TR D++ + P+ ++T +
Sbjct: 227 VPPTSPEPTTRRSTSTESTSSQSTPSPASSVTQLLDVTRSKTGHDTSSVTTLPV-SQTPT 285
Query: 127 SQPPT-LQ--DKSRLSFALVGSRAG 62
S P T LQ D + + +GS G
Sbjct: 286 SDPTTQLQSGDSNTYKYVAIGSTMG 310
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +2
Query: 419 GXRLQVVLGRQLHHV---QLRPKRG--GGVRDVSH 508
G RLQ+VL R+LHH+ +L + G G RD+ H
Sbjct: 227 GPRLQLVLPRKLHHLVYKELHEEMGHLGAERDIEH 261
>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
Length = 1441
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Frame = +3
Query: 114 VGGCEETVRAQRGEDPGQVLSQGRAGRVSRWRQNISGGSGVDDAGPVTNRTCR-REDGQL 290
+GGC+E + G + G V S + V + GG G D NR+ R
Sbjct: 1119 IGGCQEDHKLNTGHNLGYVQSNPQVSGVDQVTIRYYGGDGCHDK---FNRSTRINLHCSK 1175
Query: 291 SVGRTVEHCER-QCRRGWTYSPPAADHCXGRCVQSACLVDDQ 413
++G + E +C + + P+A H C V D+
Sbjct: 1176 TMGSPIFTTETPECEYVFDWKTPSACHLTRTAGPGDCSVTDE 1217
>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 118 PTLQDKSRL-SFALVGSRAGRRRCSWCRSRQTSSSPRRAS 2
P L DK+ + S LVG+ + CS C + SSSP AS
Sbjct: 241 PGLLDKAYIQSITLVGTDEPKSTCSQCPAGSYSSSPGSAS 280
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -3
Query: 280 SSRLH---VRLVTGPASSTPEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQ 122
SSRL VR +TG A STP PP P P + C G P AR ++ Q
Sbjct: 56 SSRLKGRTVRRITGGAPSTPAPPPPPPPPSSGPPLPPSNGKC-GRKPAGARIINGQ 110
>SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2)
Length = 287
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 55 CADLHGTLQVQSSNETCPEVSEAVKKQFVLKE 150
C DL LQ+ + E +V++ + K +VL+E
Sbjct: 85 CKDLKHALQIMQNEECNMDVADVISKMYVLQE 116
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 196 TRPARPWDSTCPGSSPL*A-RTVSSQPPTLQDKSRLSFALVGSRAGRRRCSWCRSRQTSS 20
T+ ++P D + P A R + P QDKS+ G +A R+ SR++ +
Sbjct: 148 TKTSKPQDQDKQAARPRQASRKTKTSKPQDQDKSQDQDKPQGKQAARQARPRQASRKSKA 207
Query: 19 SPRRAS 2
PR+AS
Sbjct: 208 RPRQAS 213
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/76 (26%), Positives = 28/76 (36%)
Frame = +3
Query: 309 EHCERQCRRGWTYSPPAADHCXGRCVQSACLVDDQLKEXGSKWSSADNCTTFSCDRSGEE 488
E + C GW DHC V + CL + A + +G+E
Sbjct: 240 EQGHKICLPGWR-----GDHCDIGKVSAECLKPSVRLDVIPNMEGAQHQDNVCVTPAGQE 294
Query: 489 VFVTSATSTAPTCRLR 536
FVTSA+ C +R
Sbjct: 295 SFVTSASGIRGVCTVR 310
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 232 PEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQPPTLQDKSRLSFALVGSRA 65
P PP + H TRP P G+S L + P TLQ + S V S++
Sbjct: 983 PTPPPVVSPHKQTRPISP-----VGASNLYKPLTPTSPSTLQPSKQDSLVYVSSKS 1033
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 64 LHGTLQVQSSNETCPEVSEAVKKQFVLKEEK-IPGKCCPKVEPVACRDGDKIYQEVQVW 237
LH + N +V E + L+ K + KC ++ V C G KI + V+ W
Sbjct: 1172 LHALCHTATWNNLLQKVEERSTFRATLRNAKQVATKCACDLQQVFCEAGRKIKKNVKTW 1230
>SB_18624| Best HMM Match : EGF (HMM E-Value=7.8e-06)
Length = 382
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 100 TCPEVSEAVKKQFVLK-EEKIPGKCCPKVEPVACRDGDKIY 219
TC E + K +FV GK C K P +C D KIY
Sbjct: 135 TCTEKCDHPKTKFVCNCPANASGKQCEKFLPKSCHDLYKIY 175
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 213 NISGGSGVDDAGPVTNRTCRREDGQLSVGRTVE 311
N GG G D GP+ C E+ ++VG +E
Sbjct: 175 NFGGGFGGDFGGPLEEEICVGEEEGVAVGEDLE 207
>SB_23961| Best HMM Match : Pentaxin (HMM E-Value=5.5e-08)
Length = 405
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 366 HCXGRCVQSACLVDDQLKEXGSKWSSADNCTTFSCD 473
HC G V+ L D Q + KW+S D F D
Sbjct: 45 HCLGSFVEVDSLADGQWHQVCVKWNSTDGKWAFYVD 80
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 22 WTSADFCTNYTCADLHGTLQVQSSNETCPEVSEAVKK 132
W S D AD LQ S+ E+CP + +KK
Sbjct: 987 WLSFDAAVKTVYADFWAVLQTLSAFESCPVATGLLKK 1023
>SB_12395| Best HMM Match : FG-GAP (HMM E-Value=7e-07)
Length = 458
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 231 GVDDAGPVTNRTCRREDGQLSVGRTVEHCERQCRRGWTYS 350
GV+ AGP T +GQ G H R C T+S
Sbjct: 322 GVNQAGPFIAYTTTDTNGQTKAGSVTSHPVRSCSTLETFS 361
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,117
Number of Sequences: 59808
Number of extensions: 349206
Number of successful extensions: 1430
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -