Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00321X
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22750.1 68417.m03283 zinc finger (DHHC type) family protein ... 36 0.018
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 31 0.67
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 31 0.67
At5g48120.1 68418.m05944 expressed protein low similarity to MMS... 29 2.7
At2g11090.1 68415.m01187 expressed protein 28 4.7
At1g73330.1 68414.m08488 protease inhibitor, putative (DR4) iden... 28 4.7
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi... 27 6.2
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 27 6.2
At3g24740.1 68416.m03106 expressed protein 27 6.2
At4g22240.1 68417.m03218 plastid-lipid associated protein PAP, p... 27 8.3
At1g75640.1 68414.m08788 leucine-rich repeat family protein / pr... 27 8.3
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ... 27 8.3
>At4g22750.1 68417.m03283 zinc finger (DHHC type) family protein
contains DHHC zinc finger domain PF01529
Length = 302
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 282 GQLSVGRTVEHCERQCRRGWTYSPPAADHC--XGRCV 386
G+ SVG + H R CR+ Y PP + HC GRC+
Sbjct: 103 GEASVGDSSSHGVRYCRKCNQYKPPRSHHCSVCGRCI 139
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 30.7 bits (66), Expect = 0.67
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 535 RRRHVGAVLVADVT--NTSSPLRSQLNVVQLSAEDHLEPXSLSWSST 401
R R V A VA + + SSP +LN QL+ ED+ E +W T
Sbjct: 1838 RLRSVPAKKVASTSKLHVSSPKSGRLNATQLTVEDNAEASRETWDGT 1884
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 30.7 bits (66), Expect = 0.67
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 535 RRRHVGAVLVADVT--NTSSPLRSQLNVVQLSAEDHLEPXSLSWSST 401
R R V A VA + + SSP +LN QL+ ED+ E +W T
Sbjct: 1837 RLRSVPAKKVASTSKLHVSSPKSGRLNATQLTVEDNAEASRETWDGT 1883
>At5g48120.1 68418.m05944 expressed protein low similarity to MMS19
[Mus musculus] GI:14029390
Length = 1152
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 429 SKWSSADNCTTFSCDRSGEEVFVTSATST 515
S W + C FSCD +G E FV +A +T
Sbjct: 703 SMWKQIEFCGVFSCDFNGRE-FVEAAMTT 730
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 310 STVRPTDSCPSSRLHVRLVTGPAS-STPEPPDIFCRHLDTR 191
ST +P+ + P +RLH RL PAS S+P FC DTR
Sbjct: 86 STTKPSTTIPITRLHTRL---PASESSP-----FCTQPDTR 118
>At1g73330.1 68414.m08488 protease inhibitor, putative (DR4)
identical to Dr4 GI:469114 from [Arabidopsis thaliana];
contains Pfam profile PF00197: Trypsin and protease
inhibitor
Length = 209
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 443 GRQLHHVQLRPKRGGGVRDVSHEHCP-DVSPATRP 544
G+ H V P+ GGG+ S E CP D+ + P
Sbjct: 39 GQTYHIVPANPETGGGIFSNSEEICPLDIFQSNNP 73
>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1030
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 19 SWTSADFCTNYTCADLHGTLQVQS-SNETCPEVSEAVKKQFVLKEEKIPGKCCPKV 183
SW + N +H ++Q SN C E++ + K +F +EE + CP++
Sbjct: 542 SWVISSMEKNGEKEKIHLIKEIQKRSNSYCDELNGSGKAEFSQEEELVDDYNCPQL 597
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 455 HHVQLRPKRGGGVRDVSHEHC-PDVSPAT 538
HH QLRP + H HC P +PAT
Sbjct: 59 HHRQLRPPSIPVTTNTGHRHCRPPSNPAT 87
>At3g24740.1 68416.m03106 expressed protein
Length = 354
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 352 GEYVQPRRHCRSQCSTVRPTDSCPS 278
G Y RRH R T RP+D+ PS
Sbjct: 176 GNYQDLRRHARRTHPTTRPSDTDPS 200
>At4g22240.1 68417.m03218 plastid-lipid associated protein PAP,
putative similar to plastid-lipid associated proteins
PAP2 [Brassica rapa] GI:14248550 GI:14248556; contains
Pfam profile PF04755: PAP_fibrillin
Length = 310
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 232 PEPPDIFCRHLDTRPARPWDSTCPGSSPL*ARTVSSQPP 116
PE ++ + +D P R ++ ++ ART+SSQPP
Sbjct: 226 PEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTISSQPP 264
>At1g75640.1 68414.m08788 leucine-rich repeat family protein / protein
kinase family protein contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
Length = 1140
Score = 27.1 bits (57), Expect = 8.3
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 129 ETVRAQRGEDPGQVLSQGRAGRV--SRWRQN-ISGGSGVDDAGPVTNRTCRREDGQLSVG 299
ET+ A R D VLS+GR G V + +R + + D +T+ T R + L G
Sbjct: 831 ETLEATRQFDEENVLSRGRYGLVFKATFRDGMVLSVRRLMDGASITDATFRNQAEAL--G 888
Query: 300 RTVEHCERQCRRGWTYSPP 356
R V+H RG+ PP
Sbjct: 889 R-VKHKNITVLRGYYCGPP 906
>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
contains Pfam profile:PF00046 Homeobox domain and Pfam
profile:PF00076 RNA recognition motif
Length = 444
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = -3
Query: 460 VVQLSAEDHLEPXSLSWSSTRQADCTQRPXQWSAAGGEYVQPRRHCRSQCSTVRPTDSCP 281
+ Q+ D EP S S+ ++ + TQR S + RH ++ S R P
Sbjct: 212 MTQIQISDVTEPAS---SAHKKIEVTQRSSSMSRKRDK-PYTNRHTPARISK-RRRPWAP 266
Query: 280 SSRLHVRLVTGPASSTPEPP 221
SS H ++ P + P PP
Sbjct: 267 SSSEHDEIIDKPITKPPPPP 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,859,908
Number of Sequences: 28952
Number of extensions: 215597
Number of successful extensions: 753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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