Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00320
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.63 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           25   0.84 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           25   0.84 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.8  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 165 TRRMPSIHTHAPVATLLEMKLRFQNRTPYLLERNN 269
           TR++P +H H  + T L   L  +N    LLE ++
Sbjct: 98  TRKLPPLHPHTAMVTHLPQTLTSEN-VEILLEHSS 131


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 452 RINSHVAPPNLVTNGVRNVKSAVLNNPRPRVHLPPYFSAKYPPGTCVAAYPK*NPP 285
           R N +    N  +N V   +  +    R    L PY     PPG     Y + +PP
Sbjct: 30  RGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSPP 85


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 452 RINSHVAPPNLVTNGVRNVKSAVLNNPRPRVHLPPYFSAKYPPGTCVAAYPK*NPP 285
           R N +    N  +N V   +  +    R    L PY     PPG     Y + +PP
Sbjct: 31  RGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSPP 86


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 491 GIVGPSPIP 465
           G+VGP P+P
Sbjct: 33  GVVGPKPVP 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,725
Number of Sequences: 438
Number of extensions: 5525
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)