Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00319
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_378| Best HMM Match : TTL (HMM E-Value=1.8)                         28   6.8  
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)                   28   9.0  

>SB_378| Best HMM Match : TTL (HMM E-Value=1.8)
          Length = 327

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 473 NQKSQLSIDNK*LKFIQSA-IFLT*QYIFIVLSIKKFTWQFVYI 345
           NQK  +S+ +    F++ A IFL   YI ++L+ ++FTW F  I
Sbjct: 66  NQKLDMSLLDVISSFLEDAPIFLLQTYI-VLLTRREFTWTFAEI 108


>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
          Length = 582

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 673 DISECPKCHSSVFLDE 626
           DI  CP+CHS+V  DE
Sbjct: 405 DIYYCPRCHSAVVADE 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,489,380
Number of Sequences: 59808
Number of extensions: 351171
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)