Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00319
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          24   1.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.2  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 246 ICFGVNQWSITCGSVR 293
           I FGVN+WS  C  VR
Sbjct: 46  ITFGVNKWSKVCIVVR 61


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 402 TIYFYSLEHKKVYLAICLHLTRQYLKNN**YLVLKHFAQNHMLLTTGLHQNKS 244
           T+   S+E   +++ I   L ++Y+KN+    V+KH     +++     Q KS
Sbjct: 328 TLTSISVESNTMFINILKFLKQKYVKNSKLEKVIKHDILRMLIIDLRKKQLKS 380


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 500 TNIMNGLHKKYCNYNIDVSLSKI 568
           TN+ N L      YN+D+SL ++
Sbjct: 504 TNVTNILSMDNTQYNLDLSLPQL 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,016
Number of Sequences: 438
Number of extensions: 3756
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)