Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00317
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 0.85
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 2.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 2.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 2.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 4.5
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 6.0
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 6.0
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 24 7.9
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 24 7.9
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 24 7.9
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 24 7.9
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 0.85
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 188 HPPLASPFRAFWPMIRLTPPLPQHHSRW 271
HPPL +P + PP+PQ S W
Sbjct: 138 HPPLHNPLPVSCQPVLRPPPVPQVPSHW 165
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 235 THTTASATSLKVESDSLSSISV*RANAQTSLITMSTSTF 351
T +T+S+ S S S SS S +++ + + TMS+STF
Sbjct: 211 TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTF 249
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 2.6
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +1
Query: 64 CGHLFVGTNINRPMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHT 243
C +F P + N KY SK KR + HY P+ K + +
Sbjct: 279 CKDIFPSLANENPHSDNPNLKYSSKTLSKRDTSSHY--PETLKASSKHSSPVKGNSSISS 336
Query: 244 TASATSLKV 270
T + ++LK+
Sbjct: 337 TWTPSNLKI 345
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 74 YSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASPFRA 217
Y+ ++ +WS + +TP SA F T YP +S + A
Sbjct: 116 YTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPA 163
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 199 GKSIQGILAYDKTHTTASATSLKVESDSLSSISV 300
GKS+ ILAYD T + V D+ +S +V
Sbjct: 371 GKSLASILAYDDNPTEPTMQQNLVSDDTNASTAV 404
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 6.0
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 100 PMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASATSLKVE 273
P+V H +DSK + ++N+ V I + + T+A AT VE
Sbjct: 66 PVVNKHEDSFDSKTDEEYLQNVSTTTEDVSMLINTPVTEKYEQEHRDTSAQATPSIVE 123
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 45 RCGDRRMRSPIRRYQYQ*TYGLPSQR 122
+C RR S Y Y+ TYG P +R
Sbjct: 25 KCDQRRPCSNCIAYNYECTYGQPFKR 50
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 266 RWNRIHFRQSPYEERTRKQA*LRCLHLR 349
RW++I + + Y +TR +A +R LR
Sbjct: 71 RWDKITYHRFAYLAKTRPEAGIRFADLR 98
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 88 NINRPMVYHHNAKYDSKLFRKRVENLHYVL 177
+I+ + YHHN K +S+ R + + YVL
Sbjct: 200 SISHQLNYHHNVKLNSQALRNK--SADYVL 227
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 62 NAVTYSSVPISIDLWSTITTLSTTPSYSAKGLRT 163
++V+ SVP S LW T ++L P Y+ + T
Sbjct: 365 HSVSSISVPKSSSLWLTKSSLINPPYYAKINVET 398
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 24.2 bits (50), Expect = 7.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 115 HNAK---YDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASATSLKV 270
H AK + ++ + K +E Y++ QVP + K I+ T AS S V
Sbjct: 8 HQAKQQPHHTEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPV 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,471
Number of Sequences: 5004
Number of extensions: 30689
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -