Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00317
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)               29   1.1  
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)                28   3.4  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)                      27   5.9  
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       27   5.9  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   27   5.9  
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  

>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
          Length = 906

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 238 ESYHRPECPEWTCQWWMAPGVERN 167
           +  HR E P  TC +W+ P  ERN
Sbjct: 106 DGLHRREFPVTTCIFWLIPPTERN 129


>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 62  NAVTYSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPL 199
           N    S V +  D W  + T++T  + +  G RTF  F+ +  PP+
Sbjct: 387 NKTRESLVDVITDHWIVVPTVTTLRACAKAGARTFFYFFEK-KPPV 431


>SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)
          Length = 654

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 205 TCQWWMAPGVERNEGSQPFC 146
           +C+ WM   V  N+ S+PFC
Sbjct: 387 SCRTWMQSHVAHNKSSEPFC 406


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 YPRCHPPLASPFRAFWPMIRLTPPLP 253
           +PR HPP + P     P+++   PLP
Sbjct: 737 FPRMHPPASGPPLRCTPLLQEVQPLP 762


>SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)
          Length = 559

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +2

Query: 191 PPLASPFRAFWPMIRLTPPLPQHHSRWNRIHFRQSPYEERTRKQA*LRCLHLRLNIV*AI 370
           PPLA+PF    P++ L P + +  + +N+  + +   E+ T  +  L+ L +  +    +
Sbjct: 302 PPLANPFGEGQPLMDLQPDVTE--ALFNKFTYLKKVIEDTTSSEETLKLLRVAYSYTYEL 359

Query: 371 NKY 379
             Y
Sbjct: 360 RPY 362


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 212 RAFWPMIRLTPPLPQHHSRWNRIHF 286
           R FW   RLT P   H    +RIHF
Sbjct: 590 RYFWEAARLTSPYCIHSKPQHRIHF 614


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
 Frame = +2

Query: 62  NAVTYSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASP----FRAFWPM 229
           N  T S  P+S   W   T   +TPS S    R      P    P++ P    +R   P 
Sbjct: 112 NRTTGSLSPVSKSRWKERTPSDSTPSKSRDSFRHVPIVSPPLEEPVSPPLPWAYRKHSPS 171

Query: 230 IRLTPPL----PQHHSRWNRIHFRQSPYEERTR 316
           +  +PP+     Q  S+  +  +  SP+  ++R
Sbjct: 172 V--SPPIYKGREQLKSKSPKRTWSNSPFRHKSR 202


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 338  DIVIKLVCAFALHTEIDESESD 273
            D  +KL C F+  TE DESE D
Sbjct: 1364 DNYVKLACIFSDGTETDESEPD 1385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,205
Number of Sequences: 59808
Number of extensions: 232511
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)