Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00316X
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 39 6e-04
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 35 0.008
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 29 0.68
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.1
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 2.7
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 3.6
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 4.8
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 26 4.8
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 4.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 6.3
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 6.3
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 25 6.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.3
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 6.3
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 8.4
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 8.4
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 38.7 bits (86), Expect = 6e-04
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +3
Query: 264 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSELLAALKVLDGHLLTRTF 443
+A+V Q+ S+++SEL A + P + +++Q + A++ + D L ++T+
Sbjct: 90 KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149
Query: 444 LVTERITLADV 476
LV R+TLAD+
Sbjct: 150 LVGSRLTLADI 160
Score = 31.9 bits (69), Expect = 0.073
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 118 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 234
N D KFP K+P F DG L+E+ AIA+Y+A+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 35.1 bits (77), Expect = 0.008
Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +3
Query: 264 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSELLAALKVLDGHLLTR 437
+A + +W + + +++ P + WV + G + + ++ + + + + +LK+ + + R
Sbjct: 93 EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152
Query: 438 TFLVTERITLADVIVFSTLLHAF 506
T+LV +R TLAD + F +LL F
Sbjct: 153 TYLVGDRFTLAD-LFFGSLLRIF 174
Score = 30.3 bits (65), Expect = 0.22
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = +1
Query: 7 GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 186
G LY++ N R L A+ V + + S D KFP K+P F ADG
Sbjct: 4 GTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIGADG 60
Query: 187 KVLLTESNAIAYY 225
L+E AI Y
Sbjct: 61 -FELSEVIAIVKY 72
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 0.68
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 391 SYWPP*KYWTDIFSHAPSLLPRESHLPMSLSSVH--CCMLSTRARPERPFVADKRSEL 558
+Y PP Y D+FS APS+ + S+S +T + PFV S+L
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMSPTPEVVSPAATNSAISSPFVRKSSSDL 314
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 25 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 204
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 205 SN 210
SN
Sbjct: 612 SN 613
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 256 WLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 348
W+P PV SG T+ C+ LP G +T V
Sbjct: 24 WVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 194 STFPSALSNAGTFPAGNFFKKSSDL 120
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 199 TESNAIAYYVANESLRGGDWLPKPVSGSGHHGLTVNYCLLPVLGSSLT 342
T SN ++ + +E + + LPK + G NY ++ VLGS T
Sbjct: 3 TASNRVSTQIVDEHKQFNNELPKFMQSVGLLDAGFNYHVVAVLGSQST 50
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 401 RLKSTGRTSSHTHLPCYRENHTCRCHCLQYTAACFPHVLDPSVRSSLIN 547
RLKST TS T+ + + RC ++ A P + + S+ N
Sbjct: 15 RLKSTSATSPITYKALHANSPLPRCRIIEPPRATVPEAVSNIIMSTPFN 63
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 301 VNYCLLPVLGSSLTLVSCNSTNRML 375
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 593 PTLVAGGRRSGTNSERLSATNGRSGLARVESMQQCTEDNDIGKC 462
P++ G + ++SER ++N R Q+ TED D GKC
Sbjct: 831 PSIHVEGLETYSSSERKDSSNKYKSRKRNPIRQKVTED-DKGKC 873
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 256 WLPKPVSGSGHHGLTVNYCLLPV 324
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -2
Query: 508 WKACSSVLKTMTSASVILSVTRKVRVRRCPSSTFKAASSSDFARSTFCLLNCM 350
W +S+LK + + + + K SS + S A++T C+ NC+
Sbjct: 349 WSTATSILKRESHSFIHVHENVKDEDIETYSSEVNSCFSKMLAKNTVCVTNCV 401
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +1
Query: 433 HAPSLLPRESHLPMSLSSVHCCM-LSTRARPER----PFVADKRSELVPDRRPP 579
H PS PRE ++ SL V + LS P+R F KR RPP
Sbjct: 391 HIPSTTPRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRFAFDTRNRPP 444
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 208 NAIAYYVANESLRG-GDWLPKPVSGSGHHGLTVNYCLLPV 324
+A + + A+ L G +LP + G G GL NY +PV
Sbjct: 292 SATSQFCADMVLYGFSSFLPVIIKGLGFVGLQTNYMTIPV 331
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 211 AIAYYVANESLRGGDWLPKPVSGSGHHGLTVNYCLLPVL 327
A AYY++ + L DW P V SG+ + C + ++
Sbjct: 340 ATAYYLSMQMLGHLDWTPCHVYYSGYTARQLKPCAIIIM 378
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 1 AAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 114
A G +YT E+FRA K+L S T V+ FV FGE
Sbjct: 329 ALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,252
Number of Sequences: 5004
Number of extensions: 57247
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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