Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00316X
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07) 85 5e-17
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) 31 0.93
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 31 0.93
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9) 29 3.8
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08) 28 6.6
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 27 8.7
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 27 8.7
>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
Length = 203
Score = 84.6 bits (200), Expect = 5e-17
Identities = 41/76 (53%), Positives = 51/76 (67%)
Frame = +1
Query: 1 AAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESA 180
AAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 2 AAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFETK 60
Query: 181 DGKVLLTESNAIAYYV 228
+ YV
Sbjct: 61 TANACTRAMPLLTTYV 76
Score = 70.9 bits (166), Expect = 7e-13
Identities = 31/71 (43%), Positives = 50/71 (70%)
Frame = +3
Query: 282 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSELLAALKVLDGHLLTRTFLVTERI 461
+ +++D ELLPA+ WVFP G+MQ++KQ+ ++A ++ + +L+ LL +TFLV ER+
Sbjct: 75 YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134
Query: 462 TLADVIVFSTL 494
TLAD+ V L
Sbjct: 135 TLADIAVCCVL 145
>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
Length = 505
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 31 NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 210
N +K + Q + K+ P V GE N + +KK +P GK + + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164
Query: 211 AIAYYVANESL 243
I + N+SL
Sbjct: 165 IIVNDIENDSL 175
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 425 SSHTHLPC--YRENHTCRCHCLQYTAACFPH 511
S +T PC Y+ TC C C+ YT PH
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYTPFPCPH 903
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Frame = +1
Query: 91 APNFVFGET---NKSEDFLKKFPAGKVPAFE---SADGKVL-LTESNAIAYYVANESLRG 249
+PN +F + +E +L F +G + E SA+G++ L +A ++++ R
Sbjct: 1798 SPNKMFNTAAPQSSNEVWLTSFCSGHSLSVELAASAEGQLNGLVSQAGVASLLSSQGFRE 1857
Query: 250 GDWLPKPVSGSGHHGLTVN 306
G W P+PVSG L ++
Sbjct: 1858 GLWKPEPVSGEAFSSLPLS 1876
>SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 212 PSLTTLPMKVSAEETGYPSPCLAVGIMV*Q*TTACFLCLGLPLPWYHAIQQTEC*TC 382
PS+TT +++E G P P + G + T C L L W A+ C C
Sbjct: 109 PSMTTTYGGITSEARGIPEPIVTTGSAMNDSVTGCSL---LHQMWKKAVSDNFCALC 162
>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
Length = 364
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 160 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 41
+FR + + + S ++ N V +SHQSR IV T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 28.7 bits (61), Expect = 3.8
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -2
Query: 364 LLNCMIPR*GKTQAQEAGSSSLSDHDAHCQTRAWVASLLRGDFHWQRSKRWHCFQLGALF 185
LL M R + AQ AG S+ D C + ++ GD+HWQ +K + A F
Sbjct: 108 LLKRMRKRARELAAQGAGEESVFDR-IRCVA---LTRIVYGDYHWQLAKAYSKLAY-AYF 162
Query: 184 H-RHFRMQALFRQETSSRSL 128
H R QAL E + +L
Sbjct: 163 HLRGLAPQALKHAENARDTL 182
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 263 PSPCLAVGIMV*Q*TTACFLCLGLPLPWYHAIQQ 364
PSPC A+ + +T +C LP PWY AI Q
Sbjct: 1054 PSPCYAM-----RQSTKPVVCGNLPSPWYAAIYQ 1082
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 76 TDVKVAPNFVFGETNKSEDFL----KKFPAGKVPAFESADGKVLLTESNAIAYYVANESL 243
T+++ VFG ++ E F+ KKF + + A + G+V++TE ++ + ++
Sbjct: 477 TELRSQAKHVFGVRHECEPFVIEFQKKFRSLGIKAGLNDSGRVVVTEVSSFGLVGKDGNV 536
Query: 244 RGGDWL 261
R GD+L
Sbjct: 537 RVGDYL 542
>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 330 VFPYLGIMQFNKQNVERAKSELLAALKVLDGHLLTRTFLVTERITLAD 473
++P + Q NV+R ++L + K+ L R F V E T AD
Sbjct: 73 IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120
>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
Length = 619
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 581 AGGRRSGTNSERLSATNGRSGLARVESMQQCTEDNDI 471
A GR G N ERL GRS + E + +DND+
Sbjct: 48 ADGRGCGQNDERLGEKRGRS-CFKAEEHFETDKDNDV 83
>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 250 GDWLP-KPVSGSGHHGLTVNYCLLPVLGSS 336
G W P KP GSG+ + + + L P+L ++
Sbjct: 701 GHWYPNKPTKGSGYRCILITHYLDPILAAA 730
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 572 RRSGTNSERLSATNGRSGLARVESMQQCTEDN 477
R+ T E L NG + RVES +Q T DN
Sbjct: 59 RQHATQVEELYKENGATVKVRVESFRQGTSDN 90
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +2
Query: 419 RTSSHTH--LPCYRENHTCRCHCLQYTAACFPHVLDPSVRSSLINVQSW 559
R+ SH C+R +H CH + PH ++ L SW
Sbjct: 1038 RSRSHNSYFFTCHRPHHCRLCHATLHRCPATPHCRQVTITQQLFFYLSW 1086
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,811,366
Number of Sequences: 59808
Number of extensions: 476241
Number of successful extensions: 1367
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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