Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00315
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 124 9e-30
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 70 4e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 69 8e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 67 2e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 47 3e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 41 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 8e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.20
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 4.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.4
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 5.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 5.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 124 bits (300), Expect = 9e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 122 bits (294), Expect = 5e-29
Identities = 52/56 (92%), Positives = 54/56 (96%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NR
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REKMTQI+FETFN PA YVAIQAVLSLYASGRT
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAVLSLYASGRT 148
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 641 TRAIYEGYALPH 676
T IYEGYALPH
Sbjct: 162 TVPIYEGYALPH 173
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.7 bits (163), Expect = 4e-13
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +3
Query: 255 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 401
RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
+EK+ + +ET N PA+ ++Q VL+LYAS RT
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYASART 153
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 68.5 bits (160), Expect = 8e-13
Identities = 27/63 (42%), Positives = 45/63 (71%)
Frame = +3
Query: 255 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR*VHRC 434
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANR C
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANR-EKMC 120
Query: 435 RTM 443
TM
Sbjct: 121 ETM 123
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQS 252
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASG 600
REKM + MFE + +YVAIQAVLSLYA G
Sbjct: 116 REKMCETMFERYGFGGVYVAIQAVLSLYAQG 146
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 67.3 bits (157), Expect = 2e-12
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 267 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NR
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENR 139
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 243
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYAS 597
RE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 139 RENTAEIMFESFNCAGLYIAVQAVLALAAS 168
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/70 (35%), Positives = 35/70 (50%)
Frame = +3
Query: 264 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR*VHRCRTM 443
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR V TM
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENR-VKTLETM 121
Query: 444 HFASRPVGPY 473
+ R Y
Sbjct: 122 FESLRCPATY 131
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 180
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGR 603
R K + MFE+ PA Y+A Q + +ASG+
Sbjct: 114 RVKTLETMFESLRCPATYLAKQETCAAFASGK 145
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 407
P E +++NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 189
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 28.7 bits (61), Expect = 0.82
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLY 591
R MT+++FE +N P++ I + S Y
Sbjct: 131 RSTMTELLFELYNAPSVAYGIDGLFSFY 158
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 288 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+GI+ +W+ W +L+V P E+ +++TE NP++ R
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVR 117
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.20
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -2
Query: 260 TSLLCASS----PTYESFCPM-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 96
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 95 NAATSSS 75
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 252
G+ PRA F ++ P H G+++ M KD G+E S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.2 bits (55), Expect = 4.4
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -2
Query: 440 SPASMNSPVGLGVEGSLSEQDGVFLGGDTQLIVE--GMMPNLLHVIPVSDDSVFDGVFEG 267
SP S + PVG L Q G+ + G+T + V+ G MP L +PVS D
Sbjct: 430 SPPSQHPPVGQIPSQYLPYQAGLKVPGNTPIPVKQVGGMP-LQSPLPVSMKPSADD--HS 486
Query: 266 QDTSLLCASSPTYESFCP 213
+ T +PT S+ P
Sbjct: 487 RATPTRSVEAPTLPSYAP 504
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 239 SPTYESFC--PMPTITP*WRGLPTIEGNTARGASSPAKPAL 123
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 133 NRPCTYRSHCLLPTRQLP 80
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 5.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHHTF 341
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 597 RSYTGIVLDSGDVSPHVPSTRDT 665
R YTG+V SGD+S + S D+
Sbjct: 117 REYTGLVTISGDISRGLKSAGDS 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,884
Number of Sequences: 5004
Number of extensions: 71092
Number of successful extensions: 238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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