Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00315
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 132 2e-31
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 4e-30
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 4e-30
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 7e-30
SB_56| Best HMM Match : Actin (HMM E-Value=0) 127 7e-30
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 2e-09
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 53 2e-07
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 52 3e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 4e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 41 0.001
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 32 0.49
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.65
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 0.65
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.65
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.65
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 0.86
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 2.0
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 29 3.5
SB_39844| Best HMM Match : LicD (HMM E-Value=8.6e-06) 29 4.6
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 28 6.0
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_49999| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 6.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 28 6.0
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 28 6.0
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05) 28 6.0
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 28 6.0
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 28 6.0
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 28 6.0
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16) 28 8.0
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 28 8.0
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 8.0
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 132 bits (320), Expect = 2e-31
Identities = 60/62 (96%), Positives = 62/62 (100%)
Frame = +1
Query: 70 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 250 SK 255
SK
Sbjct: 61 SK 62
Score = 127 bits (307), Expect = 7e-30
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REKMTQIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 149
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 128 bits (309), Expect = 4e-30
Identities = 59/62 (95%), Positives = 61/62 (98%)
Frame = +1
Query: 70 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 250 SK 255
SK
Sbjct: 61 SK 62
Score = 127 bits (307), Expect = 7e-30
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REKMTQIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 149
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 128 bits (309), Expect = 4e-30
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +1
Query: 70 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 250 SK 255
SK
Sbjct: 61 SK 62
Score = 127 bits (307), Expect = 7e-30
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REKMTQIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 149
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 127 bits (307), Expect = 7e-30
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Score = 125 bits (302), Expect = 3e-29
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REKMTQIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 116 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 148
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 127 bits (307), Expect = 7e-30
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Score = 126 bits (305), Expect = 1e-29
Identities = 58/60 (96%), Positives = 60/60 (100%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REKMTQIMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 116 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 148
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 126 bits (305), Expect = 1e-29
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHHTF 341
+RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1
Query: 511 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
+ M +IMFETFN+PAMYVAIQAVLSLYASGRT
Sbjct: 80 DDMEKIMFETFNSPAMYVAIQAVLSLYASGRT 111
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +3
Query: 243 STEQRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANR 419
+++ R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NR
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR 120
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 88 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 246
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASG 600
REKM ++MFE + +Y+AIQAVL+LYA G
Sbjct: 120 REKMIEVMFENYQFEGVYIAIQAVLTLYAQG 150
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 195
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 195
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 58.0 bits (134), Expect = 7e-09
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
RE+M Q+MFE+FN P MYVA+QAV++LYASGRT
Sbjct: 2161 RERMVQLMFESFNVPCMYVAVQAVMALYASGRT 2193
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +3
Query: 321 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
K+W H F ++LRV E+ PVLLTEAPLNPK NR
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNR 2161
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/33 (63%), Positives = 29/33 (87%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REK ++ FETFN PA+++++QAVLSLYA+GRT
Sbjct: 142 REKAAEVFFETFNVPALFISMQAVLSLYATGRT 174
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 369 EHPVLLTEAPLNPKANR 419
+HPVLLTEAPLNP+ NR
Sbjct: 126 QHPVLLTEAPLNPRRNR 142
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 526 IMFETFNTPAMYVAIQAVLSLYASGRT 606
IMFE FN+PA+YVAIQAVLSLYASGRT
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT 27
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 234
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 235 GDEAQSK 255
GD A +K
Sbjct: 753 GDAAVAK 759
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 273 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 386
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = -1
Query: 192 MAGPSDDRGEHGARSIISCETGLAHTGAIVYYQRGNFLV 76
MA +DD GE+G+ SI+S ETGLAHTGAI+ Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +1
Query: 508 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 606
REK+T++MFE +N PA ++ +VL+ +A+GR+
Sbjct: 49 REKLTELMFEKYNVPAFFLCKNSVLTAFANGRS 81
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 419
PI+ G++ +WD EKI + + ++ HP+L++EA N + R
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKR 49
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 270 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNP 407
L+ P + +VT+++ E++ H F + P HPV++TE NP
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNP 178
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHHTFYNE 350
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 82 EVAALVVDNGSGMCKAGFAGDDAPRAV 162
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 527 SCSKHSTRPPCTSPSKPCSHCTRPVVHRYRAG 622
+C H+ R P T+PS PC Y AG
Sbjct: 359 ACYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_39844| Best HMM Match : LicD (HMM E-Value=8.6e-06)
Length = 280
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 511 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTPVSCWTPATCLHTCHLRGI 663
E++ + MF + Y I A L A R SC+T C CH G+
Sbjct: 138 EELPKGMFFQTESTDQYYKIPAYSFLLAKLRDMSSCYTSLMCRGKCHQNGL 188
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +2
Query: 503 CFERR*PRSCSKHSTRPPCTSPSKPCSHCTRPVVHRYRAGLRRRVSTRAIYEGY 664
C+ER P C+K T PCT PC+ P RY +R Y Y
Sbjct: 754 CYERYTP--CTKRYT--PCTERYTPCTERYTPCTKRYIPFAKRYTPCTERYTPY 803
>SB_49999| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 437 PASMNSPVGLGVEGSLSEQDGVFLGGDTQLIV 342
PA + S GL EGS SEQ GV L D +++
Sbjct: 64 PAVLTSLPGLAPEGSDSEQKGVVLDKDPVMLL 95
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 258 LFALCFVSYV--RVLLSHADHHALMAGPSDDRGEHGARSIISCETGL 124
+FA C V V+LSH + H L A +HG R+ SCET L
Sbjct: 461 IFATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 506
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L LC + ++LSH + H L +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
Length = 365
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/42 (28%), Positives = 14/42 (33%)
Frame = -2
Query: 653 RWHVWRHVAGVQHDTGVRPDAYSESTAWMATYMAGVLNVSNM 528
RWH G H RP E AW G + S +
Sbjct: 283 RWHCQNPAQGGHHGADARPQTLEELVAWSKRQTGGSTSTSEV 324
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCFVSYVRVLLSHADHHALMAGPSDDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -3
Query: 301 VTIPCSMGYLRVRI--PLC-SVLRLLRTSP 221
V PC M LRVR+ P C SVLR+L P
Sbjct: 99 VVCPCCMSLLRVRVACPCCVSVLRVLIACP 128
>SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)
Length = 284
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 219 EGLVRRRRSTEQRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEA 395
E V E I + + +E G W+D+ + HTF +L + A E +P L+E
Sbjct: 27 EDRVDYHNDDESTFINSREVKLEKGKNQAWEDLRSVNAHTFDVKLFKEADESYP--LSEK 84
Query: 396 PLN 404
PLN
Sbjct: 85 PLN 87
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 521 PRSCSKHSTRPPCTSPSKPCSHCTRP 598
P + H+T+PP T P H T+P
Sbjct: 131 PCTTKPHTTKPPTTKPQTTKPHTTKP 156
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 245 ASSPTYESFCPMPTITP*WRGLPTI 171
A+SP Y S P+PT TP PTI
Sbjct: 1222 ATSPPYTSASPVPTTTPSASSSPTI 1246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,472,643
Number of Sequences: 59808
Number of extensions: 650292
Number of successful extensions: 2326
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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