Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00315
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.88 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.5  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   8.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 476 SIRAHRPRGKVHSPASMNSP 417
           ++R HR RG VH+ ++  SP
Sbjct: 304 TLRIHRGRGSVHNGSNNGSP 323


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 220 SVPCRPSRPDGGAFRRSRGTRREEHHLLRNRPCTYRSHC 104
           +V CR S P G A   S  T R E  L     C Y +HC
Sbjct: 711 NVMCRTSGPRGVAI-VSASTARSEQFL-----CRYEAHC 743


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 429 RCRTMHFASRPVGPYRPLSND*LCSVSREDDPDHVRNIQ 545
           R  T +F   P  PY   +    C+V+  +DP +VRN +
Sbjct: 134 RANTYNF-DYPQVPYTVKNFHPRCAVNNYNDPSNVRNCE 171


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 131 NFPSRPMGPWVPM 143


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 131 NFPSRPMGPWVPM 143


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 131 NFPSRPMGPWVPM 143


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 131 NFPSRPMGPWVPM 143


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 131 NFPSRPMGPWVPM 143


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 131 NFPSRPMGPWVPM 143


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 131 NFPSRPMGPWVPM 143


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 444 HFASRPVGPYRPL 482
           +F SRP+GP+ P+
Sbjct: 134 NFPSRPMGPWVPM 146


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +3

Query: 549 ARHVRRHPSRALTVRVRSYTGIVLDSGDVSPHVPSTRD 662
           ARH+   P     VR   Y G +  + ++   +   +D
Sbjct: 155 ARHLAETPKNTSAVRYTHYIGTLATNDNILESISYVKD 192


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 221 RTRT*ETKHRAKRYPDPQIPHRTRNR 298
           R+RT + +H + RY   +   R RNR
Sbjct: 218 RSRTHDFQHTSSRYSRERSCSRDRNR 243


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 533 SKHSTRPPCTSPSKPCSHCTRPVVHRYRAGLRRRVSTRA 649
           S  S  PP   P+ P S  T P +      +RRR+S ++
Sbjct: 424 SNMSGMPPL--PNMPGSMPTMPTMPSMAGPIRRRISDKS 460


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 426 HRCRTMHFASRPV 464
           +RCRTMH  +R V
Sbjct: 207 YRCRTMHRLTRQV 219


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 426 HRCRTMHFASRPV 464
           +RCRTMH  +R V
Sbjct: 207 YRCRTMHRLTRQV 219


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +3

Query: 180 KAPPSGRDGRHGTEGLVRRRRSTEQRGILTLKYPIEHGIVTNWDD 314
           K  P G  G  G + ++      ++RG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +3

Query: 180 KAPPSGRDGRHGTEGLVRRRRSTEQRGILTLKYPIEHGIVTNWDD 314
           K  P G  G  G + ++      ++RG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 115 GMCKAGFAGD 144
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,631
Number of Sequences: 438
Number of extensions: 5311
Number of successful extensions: 25
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)