Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00314
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.75 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   9.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.2  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 405 WSAPSRLKTRSVDDRRSRKKEQNKNAAT 488
           W    R+K +    R++ +++ N NAAT
Sbjct: 290 WFQNRRMKNKKNSQRQAAQQQNNNNAAT 317


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +1

Query: 13  SSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGP 126
           +SP+   +P    L     VY   +      P S PGP
Sbjct: 265 ASPYPMQRPKSASLSPPPHVYNPPDHIQQATPYSAPGP 302


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 HLQLPWHRRKKRGRLWHLFR 238
           H Q+P  RR +  +LW + R
Sbjct: 346 HWQIPLGRRFRALKLWFVLR 365


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 291  PVPRRRPSHTRNLRQLVYRNRCHNL 217
            P P +   +TR    L Y   CHN+
Sbjct: 1662 PGPGQAGEYTRAAGFLAYYEICHNI 1686


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,065
Number of Sequences: 336
Number of extensions: 1830
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)