Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00314
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    26   4.3  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   7.6  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    25   10.0 
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    25   10.0 

>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 72  LWCCRVNAFNTAAESAGTRDSVAS 143
           LW CR N+F+     A  +DSV+S
Sbjct: 124 LWDCRSNSFSPIQVLADAKDSVSS 147


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 94  ALTRQHHKPFRIPAAVLQWAARSQKDLK 11
           A T   H P + P+  +QW  +S +DL+
Sbjct: 746 AFTHLGHHPDKTPSEYIQWRFQSGEDLE 773


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 426 KTRSVDDRRSRK-KEQNKNAATRYRQ 500
           K + VDD + R+  E+N+ AA+++RQ
Sbjct: 4   KKKEVDDEKRRRILERNRIAASKFRQ 29


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 238 VNQLPEVTSVTWTPSRNWSVTEPL 309
           V + PE+    W P  +W  +EP+
Sbjct: 127 VAKTPEIQDEPWKPKFDWKESEPI 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,080
Number of Sequences: 5004
Number of extensions: 29619
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)