Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00314
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 28   7.9  
SB_14495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +3

Query: 393 TDEDWSAPSRLKTRSVDDRRSRKKEQNKNAATRYR 497
           T  D  +P +LKT +   +R RK+ QNK+AATRYR
Sbjct: 433 TKSDTVSP-KLKTPA---QRQRKRVQNKDAATRYR 463


>SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 82  VELTHLTPPQSPPGPATQ 135
           + LT LTPPQ PP P  Q
Sbjct: 74  LRLTRLTPPQPPPQPPDQ 91


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 347 CLSTFFTTIIAAFLIDRRGLVRTVTFE 427
           CLS FF TII   L D  G+V+  T +
Sbjct: 421 CLSQFFNTIIEKLLEDCYGVVQKTTLD 447


>SB_14495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 405 SPRRSMRNAAMMVVKNVERH*HYYWNVAEMPVERLGDGPVPRRRP-SHTRNLRQLVYRNR 229
           S R+ M +     + NVE H  Y     + P +R+ D P  R  P S    L + V   +
Sbjct: 93  SKRQLMIDGTPCTIVNVELHCDYDVTPCKKPQQRVPDAPCVRETPASSVIGLAKPVDFIK 152

Query: 228 CH 223
           CH
Sbjct: 153 CH 154


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 85   RQHHKPFRIPAAVLQWAARSQKDLKLEP 2
            +QH +P R P A +  AAR  +   LEP
Sbjct: 1830 KQHQEPARTPVAAVPAAARDARITSLEP 1857


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,511
Number of Sequences: 59808
Number of extensions: 252136
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)