Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00312
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   0.96 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   2.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   3.9  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   3.9  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    24   8.9  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    24   8.9  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +2

Query: 158 KMEAAREDEYFYKKQKEQLANLKGHL--NKEIAFPRSRSNDMRM--RSGVTKNKCLTLKS 325
           K+EA ++ E  YK + ++LANL+  +   K+    R  +N +R+   + +   K L+   
Sbjct: 374 KLEAKKQKEKVYKDKLDELANLETMVLEKKKAVATREAANKIRLVDLNDLELQKDLSTYL 433

Query: 326 PNELDIDSDSFRRPKNIPTK 385
             EL     +FR  K    K
Sbjct: 434 SKELASTEKAFRLVKQQTVK 453


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 190 LQEAKGTTSKPEGALEQGDCLPQEQIKRHEDAIRRHKEQMSDIEK 324
           L+E + +  + E  LE      +EQ++ H++A    K Q++ +EK
Sbjct: 312 LKELQNSNGELEKLLEAAQSSFEEQLESHKEAEASLKSQINFLEK 356


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 318 NVRHLFFVTPDRILMSFDLLLGKAISLFK 232
           N  +  F  PD +++S+  +LGKA+ L +
Sbjct: 198 NDLYRIFDRPDAVVLSYIFVLGKAVDLLQ 226


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 281 SSCRLICSWGRQSPCSSAPSGLLVVPFASCRSIHLL*QLPFYRRYHRLLES 129
           SS  L+C        S+   G+L+ PF +  S+++      + R HR L S
Sbjct: 4   SSSSLLCGINSLKYASNRV-GILIPPFQTASSLNIFRPYVIFSRSHRSLSS 53


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 333 NWTSIVIVFEDLRIFLQNKEEYNIYI 410
           ++ + V +FE +++ L  KE+Y  Y+
Sbjct: 95  DFPTAVRIFEGIKVKLPTKEQYQAYV 120


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 256 QEQIKRHEDAIRRHKEQMS 312
           +EQIK  E+  +RH+E++S
Sbjct: 20  REQIKVREERAKRHEERLS 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,306
Number of Sequences: 5004
Number of extensions: 24288
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)