Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00312
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0289 - 21969248-21973516                                         27   5.0  
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13...    27   5.0  
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585...    27   5.0  
11_06_0185 + 21018045-21022307                                         27   6.6  

>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 21/79 (26%), Positives = 40/79 (50%)
 Frame = +2

Query: 173 REDEYFYKKQKEQLANLKGHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSD 352
           R+D  F K++ E + +  GHL +  + P+   +D ++R+ + + + L     N +D+   
Sbjct: 27  RDDVQFIKEEMESMNSFLGHLAR--SAPQGGEHDEQVRTWMNQVRLLAQDCNNCIDLYLY 84

Query: 353 SFRRPKNIPTKQRRI*HLY 409
           S   P+   TK R   HL+
Sbjct: 85  S-GNPEIHRTKGRLRRHLW 102


>07_01_0020 -
           127855-129156,129240-129365,129811-129865,130047-130177
          Length = 537

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 167 AAREDEYFYKKQKEQLANLKGHLNKEIAFPRSRSNDMRMRSGVTKNKCLTL-KSPNELDI 343
           AARE+    +  + +L    G L KE+A  R R    R    + +  C  L K   E   
Sbjct: 183 AAREELKLERHHRRELEGANGKLVKEVARARQRVETERKARELMEEACEELSKEVEEDQA 242

Query: 344 DSDSFRR 364
           + ++ RR
Sbjct: 243 EVEALRR 249


>05_02_0034 +
           5856165-5856183,5858845-5859173,5859275-5859277,
           5859440-5859517,5859623-5860090,5860378-5860437,
           5860442-5860666,5860791-5860952,5861502-5861870,
           5861950-5863390,5863598-5863701,5863744-5863779,
           5863780-5863977,5864275-5864538
          Length = 1251

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 353 YHYRCP--VHWGFSMSDICSL*RLIASSCRLICSWGRQSPCSSAPSGLLVVP 204
           +H R P  +H G +M    SL     +SCRLI S    +PC S+   +LV P
Sbjct: 845 HHNRSPAMIHDGTNMKS--SL-ESSNNSCRLIASDYNATPCHSSKDQVLVTP 893


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +2

Query: 173 REDEYFYKKQKEQLANLKGHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDI 343
           R+D  F K++ E + +  GHL +  + P+   +D ++R+ + + + L     N +D+
Sbjct: 27  RDDVQFIKEEMESMNSFLGHLAR--SAPQGGEHDEQVRTWMNQVRLLAQDCNNCIDL 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,201,010
Number of Sequences: 37544
Number of extensions: 149429
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)