Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00312
(437 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2) 30 0.96
SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01) 30 0.96
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19) 29 1.3
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 29 1.7
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 2.2
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 28 2.9
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_33828| Best HMM Match : rve (HMM E-Value=3.9e-20) 28 2.9
SB_24579| Best HMM Match : rve (HMM E-Value=0.085) 28 2.9
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036) 27 5.1
SB_36953| Best HMM Match : DUF572 (HMM E-Value=7.3) 27 6.8
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19) 27 6.8
SB_25926| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0) 27 8.9
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8) 27 8.9
>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 152 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIA 250
FGKME A E++YF + Q +QLA LK H IA
Sbjct: 80 FGKMEQAHEEQYFRQMQAQQLAALKEHQEHLIA 112
Score = 33.5 bits (73), Expect = 0.078
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 256 QEQIKRHEDAIRRHKEQMSDIEKPQ*TG 339
+++I+ HE+AIRRHKE + EK +G
Sbjct: 115 KQEIEHHEEAIRRHKEALKSYEKKDGSG 142
>SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2)
Length = 251
Score = 29.9 bits (64), Expect = 0.96
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 356 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSWG 252
+Y CP HWGF +++ R C + SWG
Sbjct: 194 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSWG 227
>SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
Length = 361
Score = 29.9 bits (64), Expect = 0.96
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 356 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSWG 252
+Y CP HWGF +++ R C + SWG
Sbjct: 304 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSWG 337
>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
Length = 1065
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS SG+ +NK + P +S S P N P
Sbjct: 869 GEIEKKLASPRSYQLVTENGSGIRRNKRALVHEPVATSGESSSLPSPSNRP 919
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS SG+ +N+ + + P +S S P N P
Sbjct: 1193 GEIEKKLASPRSYQLVTENGSGIRRNRRVLVHEPVATSGESSSLPSPSNRP 1243
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 173 REDEYFYKKQKEQLANLKGHLNKEIAFPRSRSN 271
+ ++Y ++KQ+E K HL ++++ RS+ N
Sbjct: 2673 QSEKYRFQKQREDCEREKEHLRQQVSLMRSKGN 2705
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS SG+ +N+ + P +S S P N P
Sbjct: 1163 GEIEKKLASPRSYQLVTENGSGIRRNRRALVHEPVATSGESSSLPSPSNRP 1213
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS SG+ +N+ + P +S S P N P
Sbjct: 455 GEIEKKLASPRSYQLVTENGSGIRRNRRALVHEPVATSGESSSLPSPSNRP 505
>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS SG+ +N+ + P +S S P N P
Sbjct: 846 GEIEKKLASPRSYQLVTENGSGIRRNRRALVHEPVATSGESSSLPSPSNRP 896
>SB_33828| Best HMM Match : rve (HMM E-Value=3.9e-20)
Length = 298
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS SG+ +N+ + P +S S P N P
Sbjct: 211 GEIEKKLASPRSYQLVTENGSGIRRNRRALVHEPVATSGESSSLPSPSNRP 261
>SB_24579| Best HMM Match : rve (HMM E-Value=0.085)
Length = 318
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS SG+ +N+ + P +S S P N P
Sbjct: 147 GEIEKKLASPRSYQLVTENGSGIRRNRRALVHEPVATSGESSSLPSPSNRP 197
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 173 REDEYFYKKQKEQLANLKGHL 235
+E+E F+KK+K+ A L+G+L
Sbjct: 708 KEEEDFHKKEKQNYAGLRGNL 728
>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
Length = 1014
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 284 ASSCRLICSWGRQSPCSSAPSGLLVVPFASCRSI 183
A S +C+ G S C A +GL +PF C +
Sbjct: 795 AGSNSPVCAVGELSHCPCAKAGLKCLPFCRCSKL 828
>SB_36953| Best HMM Match : DUF572 (HMM E-Value=7.3)
Length = 393
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 184 ILLQEAKGTTSKPEGALEQG-DCLPQEQIKRHEDAIRRHKEQ 306
+LL + G +P L+ D + EQIK E+ +R+H E+
Sbjct: 347 LLLTDQAGRLREPMAKLKAAVDKVMPEQIKAFEEQVRKHVEE 388
>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
Length = 698
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 227 GHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKNIP 379
G + K++A PRS G+ +N+ + P + +S S P N P
Sbjct: 530 GEIEKKLASPRSYQLVTENGLGIRRNRRALVHEPVAISGESSSLPSPSNRP 580
>SB_25926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/75 (20%), Positives = 31/75 (41%)
Frame = +2
Query: 191 YKKQKEQLANLKGHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPK 370
++ Q E A L + + A ++ + R ++ ++ P E ID+ F K
Sbjct: 107 WEVQTEDEAKLDREMKHKEALLQAAATPSRRNGNISPEFSDAIRIPEERRIDNTEFNNTK 166
Query: 371 NIPTKQRRI*HLYCF 415
+ + R + + Y F
Sbjct: 167 GLSVEPRPLPYTYLF 181
>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 400 LYSSLFCRNILRSSKTITIDVQFIGAFQCQ 311
LYS++FC + S I +D+ F G CQ
Sbjct: 76 LYSTIFCYKRIYQSHVILLDI-FFGGQPCQ 104
>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
Length = 567
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 256 QEQIKRHEDA-IRRHKEQMSDIEKPQ*T 336
Q ++R +DA +RRHK MS I+K Q T
Sbjct: 382 QRILRRKQDAMLRRHKSLMSRIKKKQAT 409
>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
Length = 796
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 214 SKPEGALEQGDCLPQEQIKRH 276
SKPEGA + G L +++ KRH
Sbjct: 422 SKPEGAWQSGTDLTEQRKKRH 442
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,003,701
Number of Sequences: 59808
Number of extensions: 181669
Number of successful extensions: 570
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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