Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00312
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF326939-1|AAG49389.1| 109|Caenorhabditis elegans mitochondrial... 55 3e-08
AF038604-5|AAB92010.1| 109|Caenorhabditis elegans Hypothetical ... 55 3e-08
U49941-7|AAB53875.1| 88|Caenorhabditis elegans Mitochondrial a... 37 0.006
L12348-1|AAA28107.1| 88|Caenorhabditis elegans ATPase inhibito... 37 0.006
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 30 0.85
Z68003-4|CAA91978.2| 277|Caenorhabditis elegans Hypothetical pr... 29 1.1
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 4.5
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 4.5
>AF326939-1|AAG49389.1| 109|Caenorhabditis elegans mitochondrial
ATPase inhibitor protein.
Length = 109
Score = 54.8 bits (126), Expect = 3e-08
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 152 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEI 247
FGKMEAAREDEYFYKKQK QL L+ H+ +E+
Sbjct: 44 FGKMEAAREDEYFYKKQKAQLQELREHIQEEV 75
>AF038604-5|AAB92010.1| 109|Caenorhabditis elegans Hypothetical
protein B0546.1 protein.
Length = 109
Score = 54.8 bits (126), Expect = 3e-08
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 152 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEI 247
FGKMEAAREDEYFYKKQK QL L+ H+ +E+
Sbjct: 44 FGKMEAAREDEYFYKKQKAQLQELREHIQEEV 75
>U49941-7|AAB53875.1| 88|Caenorhabditis elegans Mitochondrial
atpase inhibitorfamily protein 1 protein.
Length = 88
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 149 TFGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFPRSRSND 274
+ G M A RE+EYF ++QK+QL NLK L ++ + D
Sbjct: 26 SLGMMGATREEEYFRRQQKDQLDNLKKKLEADMTQSQQEIRD 67
Score = 27.5 bits (58), Expect = 4.5
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 256 QEQIKRHEDAIRRHKEQMSDIEK 324
Q++I+ HE + +H++++ +IEK
Sbjct: 62 QQEIRDHEKVLEQHQQRLKEIEK 84
>L12348-1|AAA28107.1| 88|Caenorhabditis elegans ATPase inhibitor
protein.
Length = 88
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 149 TFGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFPRSRSND 274
+ G M A RE+EYF ++QK+QL NLK L ++ + D
Sbjct: 26 SLGMMGATREEEYFRRQQKDQLDNLKKKLEADMTQSQQEIRD 67
Score = 27.5 bits (58), Expect = 4.5
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 256 QEQIKRHEDAIRRHKEQMSDIEK 324
Q++I+ HE + +H++++ +IEK
Sbjct: 62 QQEIRDHEKVLEQHQQRLKEIEK 84
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.9 bits (64), Expect = 0.85
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 223 EGALEQGDCLPQEQIKRHEDAIRRHKEQMSDIEKPQ 330
EG +E+ Q++ D I +HK+Q S +EK Q
Sbjct: 1190 EGKIEEQKAKFSRQVEELHDQIEQHKKQRSQLEKQQ 1225
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 200 QKEQLANLKGHLNKEIAFPRSRSNDMRMRSGVTKNKCL-TLKSPNELDID 346
+KE+ L+ HL KEI R + + R ++ + N+ L L+ N D++
Sbjct: 1350 EKEEAEGLRAHLEKEIHAARQGAGEARRKAEESVNQQLEELRKKNLRDVE 1399
>Z68003-4|CAA91978.2| 277|Caenorhabditis elegans Hypothetical
protein E02H4.5 protein.
Length = 277
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 257 RSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKN 373
R R+ R + +K+KC +LK +L++ S S + P+N
Sbjct: 58 RQRNIPNRASNWSSKSKCASLKEQTDLNVQSHSQKLPRN 96
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 203 KEQLANLKGHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKN 373
K Q L ++NK I R D+ + S +TKNK K+P + S + R N
Sbjct: 1392 KSQCVELIDNINK-IESEGLRKEDVAIGSSITKNKGRAKKNPTTMSGSSRTTSRAAN 1447
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 203 KEQLANLKGHLNKEIAFPRSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKN 373
K Q L ++NK I R D+ + S +TKNK K+P + S + R N
Sbjct: 1348 KSQCVELIDNINK-IESEGLRKEDVAIGSSITKNKGRAKKNPTTMSGSSRTTSRAAN 1403
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,361,563
Number of Sequences: 27780
Number of extensions: 140184
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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