Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00312
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 420 YLKQYKCYILLCFVGIF 370
           Y+K    Y+++CFV +F
Sbjct: 300 YVKAIDIYLVMCFVFVF 316


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 191 YKKQKEQLANLKGHLNKEIAFPRSRSNDMRMRSG 292
           Y ++  ++  L+G   +E+   R R+ DM+ R+G
Sbjct: 724 YAEKSRRMLYLRG---REVVAQRERAADMKRRNG 754


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 235 EQGDCLPQEQIKRHEDAIRRHKEQMSD 315
           E+   + +EQ+ R +  +RR  EQ+++
Sbjct: 104 ERKHAVHKEQLSREQRFLRRRLEQLTN 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,265
Number of Sequences: 438
Number of extensions: 1724
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)