Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00312
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    30   0.79 
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    29   1.0  
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ...    27   7.3  
At3g61380.1 68416.m06869 expressed protein                             26   9.7  
At2g45460.1 68415.m05654 forkhead-associated domain-containing p...    26   9.7  
At2g15320.1 68415.m01747 leucine-rich repeat family protein cont...    26   9.7  
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil...    26   9.7  

>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 223 EGALEQGDCLPQEQIKRHEDAIRRHKEQMSDIEK 324
           E  +E+ + L ++Q K+ ED  +RH E++ D+EK
Sbjct: 572 EEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEK 605


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
            PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 227  GHLNKEIAFPRSRSNDMRMRSGVTKNKCLT-LKSPNELDIDSDSFRRPKNIPTKQR 391
            G L +E+  P   + D   ++   K K    L+ P  L+ D     +PKNIP ++R
Sbjct: 1007 GELRRELNIPIPVNKDSLYKAIERKQKKFNPLQIPKRLEKDLPFMSKPKNIPKRKR 1062


>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
           (S1) identical to S-locus related protein SLR1 homolog
           (AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
           profiles PF01453: Lectin (probable mannose binding),
           PF00954: S-locus glycoprotein family
          Length = 439

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 433 FFFFLLKTI*MLYSSLFCRNILRSSKTITI 344
           FFFF    +  L+  +F  N L S++T+TI
Sbjct: 14  FFFFFFVVLLALFLHVFSINTLSSTETLTI 43


>At3g61380.1 68416.m06869 expressed protein
          Length = 718

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 263 RSNDMRMRSGVTKNKCLTLKSPNELDIDSDS 355
           +S + R RS V K   +    PN LD+DS +
Sbjct: 179 KSEERRNRSQVAKTIVVLKPGPNTLDVDSST 209


>At2g45460.1 68415.m05654 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 915

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +1

Query: 193 QEAKGTTSKPEGALEQGDCLPQEQIKRHEDAIRRHKEQMSDI 318
           +E +   ++ + A+ +     QE++KR  DA  RH+ +  ++
Sbjct: 371 EERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEV 412


>At2g15320.1 68415.m01747 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 382

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 347 YRCPVHWGFSMSDICSL*RLIASSCRLICS 258
           + C   W F++SD C+  R    +C + CS
Sbjct: 43  WSCLASWDFTVSDPCASPRRTHFTCGITCS 72


>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 422

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 184 ILLQEAKGTTSKPEGALEQGDC-LPQEQIKRHEDAIRRHKEQMSDIEKPQ 330
           I+  EAK T +KP  A+  G   +P+E++     ++ +  E     E P+
Sbjct: 166 IVPTEAKTTVTKPASAIPNGHAKVPEEKVVNENSSLPKAAEAKLQEEVPK 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,492
Number of Sequences: 28952
Number of extensions: 125154
Number of successful extensions: 341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)