Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00310
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.52 
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.4  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    25   8.4  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = -1

Query: 379 SENLCLLSRQPQSQPALLFLRSIISKFVNAKRSIWILLVQLVI 251
           SE      R  ++Q ALL L  I SKF N   + W LLVQL I
Sbjct: 858 SELSVRFGRDFRAQLALLVLFWISSKFGNIIDASWPLLVQLTI 900


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 88  VAINNATLTKFIFAQCINSGTGLLVPSSA 2
           + I+  +LTK +   C++ GTG +  S A
Sbjct: 470 ILIHRHSLTKNLQVNCVHRGTGSITDSQA 498


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 382 KSENLCLLSRQP-QSQPALLFLRSIISKFVNAK 287
           +SE++ LL R+    +  LL+LR +ISK + +K
Sbjct: 384 RSESVELLKRESFLLKKVLLYLRDVISKLLKSK 416


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -2

Query: 264 FNWLSLPSFS*MIDNAALCRHH---PCIPC 184
           +N ++L  +  ++DN A+CR+H    CI C
Sbjct: 26  WNAVALWQWDIVVDNCAICRNHIMDLCIEC 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,778
Number of Sequences: 5004
Number of extensions: 35956
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)