Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00310
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.44 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   3.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = +3

Query: 120 PPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEI 254
           P   ++LN   ++ E  + +++R  +  +DR +  ++ KKNL+++
Sbjct: 317 PELQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKV 361


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 68  CGVVNSHSSNGVIGG 112
           CGV N H   G++GG
Sbjct: 329 CGVHNLHGMPGILGG 343


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 77  VNSHSSNGVIGGYRSS 124
           V+SHSSNG+  G+  S
Sbjct: 76  VSSHSSNGIHTGFGGS 91


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 KEHNREYKD-DADRELHYQSFKKNLAEITN 260
           K+ NREYK+ D   E  Y   +K L E T+
Sbjct: 6   KDRNREYKEKDRRYEKLYNEKEKLLEERTS 35


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 126 RHYDLNQAKELFESFVKEHNREYKD 200
           RHYD  + +E  E++  EH   + D
Sbjct: 174 RHYDRYKEEESNENYNWEHKETHID 198


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 386  TEVGELMSS*QAASIPT 336
            T VGE  SS  AA +PT
Sbjct: 1293 TRVGEGQSSKVAAQVPT 1309


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 386  TEVGELMSS*QAASIPT 336
            T VGE  SS  AA +PT
Sbjct: 1289 TRVGEGQSSKVAAQVPT 1305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,448
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)