Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00309X
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 125 3e-30
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 69 2e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 67 9e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 67 1e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 41 7e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 4e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.043
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 0.70
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.6
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.1
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 2.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.8
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 2.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 2.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.8
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.5
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 8.3
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 24 8.6
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 125 bits (302), Expect = 3e-30
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NR
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116
Score = 123 bits (297), Expect = 1e-29
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ+K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.3 bits (162), Expect = 2e-13
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
Score = 64.9 bits (151), Expect = 5e-12
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 407
RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 67.3 bits (157), Expect = 9e-13
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 273 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NR
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENR 139
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 249
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 66.9 bits (156), Expect = 1e-12
Identities = 24/55 (43%), Positives = 42/55 (76%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANR
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANR 116
Score = 55.6 bits (128), Expect = 3e-09
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQA 258
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.4 bits (105), Expect = 2e-06
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 270 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENR 114
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 186
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.1 bits (92), Expect = 7e-05
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 413
P E +++NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 195
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 4e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
Score = 34.3 bits (75), Expect = 0.008
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 294 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
+GI+ +W+ W +L+V P E+ +++TE NP++ R
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVR 117
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.043
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -1
Query: 266 TSFACASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 102
TS +C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 101 NAATSSS 81
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.9 bits (59), Expect = 0.70
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -1
Query: 317 IPVSDDSVFDGVFEGQDTSFACASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 138
+P + +V +TSFA ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 137 PALHIP 120
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 245 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 129
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 1.6
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -3
Query: 276 GSGYLFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSH-------PSSRKDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 145 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 249
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 243 SYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHTG 118
+Y +LL D Y + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 127 TYRSHCLLPTRQLLRRTS*ISEI 59
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 298 PCSMGYLRVRIPLLLVPHLLHKSPSVPYRP 209
P + Y PL VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 253 VPHLLHKSPSVPYRPLRPDGGAFPRSRGTR 164
+ L+ K+PS PY RP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTF 347
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAG 147
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 8.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 267 ILTLKYPIEHGIVTN 311
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 306 TNWDDMEKIWHHTFYNELRVAPEEHP 383
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 422 VGLGVEGSLSEQDWVF 375
V + V GSL EQ+W F
Sbjct: 96 VDMAVNGSLFEQEWAF 111
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 364 SPPRNTQSCSLRLPSTP 414
SPP++T+ S R PS P
Sbjct: 285 SPPQSTRPSSTRFPSVP 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,650
Number of Sequences: 5004
Number of extensions: 42522
Number of successful extensions: 134
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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