Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00309X
(425 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 131 2e-31
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 4e-31
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 4e-31
SB_56| Best HMM Match : Actin (HMM E-Value=0) 130 4e-31
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 4e-31
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 1e-29
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 6e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 53 9e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 1e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 37 0.006
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 36 0.014
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 32 0.17
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 32 0.23
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 32 0.23
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 32 0.23
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.30
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 0.30
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.70
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 0.92
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 1.2
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 29 1.2
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 1.2
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 1.2
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 1.2
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 1.2
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 1.2
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 29 1.6
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_55639| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_57561| Best HMM Match : fn3 (HMM E-Value=0) 27 6.5
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 6.5
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 27 8.6
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 27 8.6
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 27 8.6
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 27 8.6
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 131 bits (317), Expect = 2e-31
Identities = 59/62 (95%), Positives = 62/62 (100%)
Frame = +1
Query: 76 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 256 AK 261
+K
Sbjct: 61 SK 62
Score = 130 bits (315), Expect = 4e-31
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 130 bits (315), Expect = 4e-31
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Score = 127 bits (306), Expect = 4e-30
Identities = 58/62 (93%), Positives = 61/62 (98%)
Frame = +1
Query: 76 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 256 AK 261
+K
Sbjct: 61 SK 62
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 130 bits (315), Expect = 4e-31
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Score = 124 bits (299), Expect = 3e-29
Identities = 56/60 (93%), Positives = 60/60 (100%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ+K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 130 bits (315), Expect = 4e-31
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Score = 125 bits (302), Expect = 1e-29
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ+K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 130 bits (315), Expect = 4e-31
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Score = 127 bits (306), Expect = 4e-30
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = +1
Query: 76 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 256 AK 261
+K
Sbjct: 61 SK 62
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 125 bits (302), Expect = 1e-29
Identities = 56/60 (93%), Positives = 60/60 (100%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ+K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 64.1 bits (149), Expect = 5e-11
Identities = 28/31 (90%), Positives = 28/31 (90%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 347
SKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 63.7 bits (148), Expect = 6e-11
Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANR 425
R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NR
Sbjct: 65 RYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR 120
Score = 50.0 bits (114), Expect = 8e-07
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 252
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 201
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 201
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +3
Query: 327 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
K+W H F ++LRV E+ PVLLTEAPLNPK NR
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNR 2161
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 53.2 bits (122), Expect = 9e-08
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 70 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 240
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 241 GDEAQAK 261
GD A AK
Sbjct: 753 GDAAVAK 759
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 1e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 279 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 392
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 198 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 82
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 37.1 bits (82), Expect = 0.006
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 425
PI+ G++ +WD EKI + + ++ HP+L++EA N + R
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKR 49
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 35.9 bits (79), Expect = 0.014
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 375 EHPVLLTEAPLNPKANR 425
+HPVLLTEAPLNP+ NR
Sbjct: 126 QHPVLLTEAPLNPRRNR 142
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 32.3 bits (70), Expect = 0.17
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C V+LSH + + M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C V+LSH + + M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C V+LSH + + M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C V+LSH + + M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C V+LSH + + M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C V+LSH + + M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C V+LSH + + M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 173 GNTARGASSPAKPALHIPEPLSTT 102
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 173 GNTARGASSPAKPALHIPEPLSTT 102
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 31.5 bits (68), Expect = 0.30
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.7 bits (66), Expect = 0.53
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 276 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNP 413
L+ P + +VT+++ E++ H F + P HPV++TE NP
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNP 178
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.70
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 173 GNTARGASSPAKPALHIPEPLSTT 102
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 0.92
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNE 356
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFAGDDAPRAV 168
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 410 VEGSLSEQDWVFLGGDTQLIVEGMMPNLLHVI 315
+ SL++Q+W + D Q+IVEG M N ++I
Sbjct: 1329 IRQSLTKQEWRWQMDDPQMIVEGAMQNHYNMI 1360
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L CLC + ++LSH + + L +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 264 LFCLCLISYIRVLLSHTDHYALMAGPSHDRGEHGARSIISCETGLAHT 121
L C+C ++LSH + + L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 168 VPLDRGKAPPSGRNGRYGTEGLLCRR*GTSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 341
V L + +GR G+ +CR+ K ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 342 TFYN 353
T N
Sbjct: 497 TCPN 500
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 173 GNTARGASSPAKPALHIPEPLSTT 102
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 173 GNTARGASSPAKPALHIPEPLSTT 102
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_55639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 328 FSMSSQLVTIPCSMGYLRVRIPLLLVPHLLHKSPSVP 218
F +S LVT S + + P LLVPH L K S+P
Sbjct: 571 FEISPPLVT---SSSHSLTQSPTLLVPHRLKKKESIP 604
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 244 LLHKSPSVPYRP--LRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 98
LL +S P +P +RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 188 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 78
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1614
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 207 YALMAGPSH--DRGEHGARSIISCETGLAHTGAIVY 106
Y+L+A P + G H + S+ +C T +A G VY
Sbjct: 319 YSLIATPLNGTSAGAHNSISVFTCNTSVAIAGLAVY 354
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 94 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 198
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 183 GKAPPSGRNGRYGTEG 230
G+A PSGRNG GT G
Sbjct: 163 GEAGPSGRNGANGTAG 178
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 26.6 bits (56), Expect = 8.6
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = -3
Query: 264 LFCLCLISYI--RVLLSHTDHYALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQ 100
+F CL + V+LSH + + L A +HG R+ SCET L H A + +
Sbjct: 461 IFATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNK 519
Query: 99 RGNFFVAHLELVK 61
G V L+ K
Sbjct: 520 HGQVDVLLLDFQK 532
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 331 IFSMSSQLVTIPCSMGYLRVRIPLLLVPHLL 239
+F++ S + PC + Y + IP++L PH L
Sbjct: 1630 LFAVISPINRCPCGVLYPSIGIPVVLNPHKL 1660
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 26.6 bits (56), Expect = 8.6
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = -2
Query: 325 SMSSQLVTIPCSMGYLRVRIPLLLVPHLLHKSPSVPYRPLRPDGGAFPRSRGTRREEHHL 146
+++SQ VT M R +PL+ P + KSP V + P PD + R E HH
Sbjct: 792 ALTSQQVTSSHDMP--RTSMPLVSYPPHMKKSPFVVHHP--PDSAS--RHGNQAPEAHH- 844
Query: 145 LRNRPCTYRS 116
+ P +Y+S
Sbjct: 845 --HEPGSYKS 852
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 73 KMCDEEVAALVVDNG-SGMCKAGFAGD 150
++CD++ + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 138 TGLAHTGAIVYYQRGNFFVAHLELVKLVRC 49
+G +T A VY+QRGN + H + V + C
Sbjct: 358 SGRGNTWA-VYFQRGNTWTVHFQRVNTMGC 386
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1
Query: 254 CASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKP 135
C S P F +P P W LP+ E N G SS A P
Sbjct: 2229 CESDPVDSLFSEVP---PEWSTLPSPEQNAFGGDSSWASP 2265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,469
Number of Sequences: 59808
Number of extensions: 380174
Number of successful extensions: 1166
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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