Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00308X
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 127 1e-30
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 46 6e-06
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 38 0.001
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.7
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 4.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.9
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.4
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 25 8.5
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 8.5
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.5
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 127 bits (306), Expect = 1e-30
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1
Query: 277 RLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPID 456
RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IPVG TLGRI+NVIGEP+D
Sbjct: 91 RLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVD 150
Query: 457 ERGPIPTDKTAAIHAEAQS 513
ERGPI K + IHA+A S
Sbjct: 151 ERGPIKAVKYSPIHADAPS 169
Score = 46.8 bits (106), Expect = 2e-06
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 513 FVDMSVQQEILVTGIKVVDLLAPYAKGGKI 602
F + S EIL TGIKVVDLLAPYA+GGKI
Sbjct: 170 FEEQSTTPEILETGIKVVDLLAPYARGGKI 199
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 212 DVQFED--NLPPILNALRCKI 268
D QFED +LP ILNAL K+
Sbjct: 66 DCQFEDADSLPSILNALEVKL 86
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 45.6 bits (103), Expect = 6e-06
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 292 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 468
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 469 IPTDKTAAIHAEAQSL 516
I T + + +A +
Sbjct: 149 IKTTERRRVQLKAPGI 164
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 283 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 459
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117
Query: 460 RGP 468
+GP
Sbjct: 118 KGP 120
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 467 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 333
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 93 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 203
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 343 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 459
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 473 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 330
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 407 PTGIRMGEPESSTGCPRTKPSVPSMAMV 324
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 451 IDERGPIPTDKTAAIHAEAQSLSTCLC 531
I+E P+ T T +HA A + LC
Sbjct: 132 IEEAYPVKTGDTVVVHAAAGGVGLLLC 158
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 268 RSPRLVLEVAQHLGENTVRTIAMD 339
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 433 NVIGEPIDERGPIPTDKTAAIHAEAQSLSTC 525
NV P D PT+ ++ A +QS+ TC
Sbjct: 106 NVPSTPSDSTQQPPTNTLPSVSASSQSVETC 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,969
Number of Sequences: 5004
Number of extensions: 52002
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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