Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00308X
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 35 0.043
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 35 0.057
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 1.2
11_02_0015 - 7355989-7357092 30 1.2
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027... 30 1.2
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 2.1
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 29 2.1
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 29 3.7
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 29 3.7
11_06_0693 - 26334574-26336121 28 5.0
04_04_0266 - 24043482-24043778,24043974-24044074,24044154-240443... 28 5.0
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 28 6.5
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 28 6.5
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 27 8.7
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 27 8.7
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 159
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
GE V + +GT G+ + +G ++ PV + LGR+ N G+PID PI
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPI 119
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 449 GSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 324
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>11_02_0015 - 7355989-7357092
Length = 367
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 359 RTKPSVPSMAMVRTVFSPKCWATSSTRRGD 270
RTKP P ++R WAT +TRR D
Sbjct: 14 RTKPKPPMSRLMRLSLKAVDWATDATRRAD 43
>02_05_0549 +
29900714-29900953,29902224-29902323,29902578-29902719,
29902720-29902826,29903179-29903480
Length = 296
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 421 RGFQLPPGYEWVSQSRVQVAHGLSLQYRPWQWSELCSHPNVGLP 290
RG++L Y+WV R QV + Q + ++ + PNVG P
Sbjct: 174 RGWRLSQSYQWVKDRRPQVQLTDASQNQLVEYEQKLFGPNVGAP 217
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 328 IAMDGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 471
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 223 ELHIYHSTDNGNNLTLAFSCRF 158
ELH+ H+ +NGN LAF RF
Sbjct: 136 ELHMVHTNENGNITVLAFLYRF 157
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 383 PESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCT 258
P ++ G PR PS P + PKC R G FCT
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCT 908
>09_02_0625 + 11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 105 NVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MC 218
N E S+ SMP L NL+E AK LLP L+ +C
Sbjct: 920 NAELSINSMPTAS---LSNLEEYAKKSLLPAVALFALC 954
>11_06_0693 - 26334574-26336121
Length = 515
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 588 WHKERADRRLLYQLRESPAAQ 526
WH A+RRLL+ L SP A+
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR 40
>04_04_0266 -
24043482-24043778,24043974-24044074,24044154-24044371,
24044464-24044598,24044695-24044762,24044850-24044991,
24045063-24045473,24045558-24045665,24046223-24046314,
24046462-24046510,24046596-24047024,24047114-24047295
Length = 743
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 316 CSHPNVGLPQVRGGEIDFAPQGI*NRRQVIFELHIYHSTDNGNNLTLAFSCR 161
C + L +V GG + FAP G+ N L ST + + +T+ CR
Sbjct: 636 CKIYTIALIKVFGGFVQFAPLGLVNMYNSGGALENVTSTGDCSEITIQIQCR 687
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 407 PTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSP 306
P G++ P ++ GC P +P M + R V P
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPP 73
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 345 STVHGNGPNCVLTQMLGYLKYEAGRSILHLRAFRIGGRLSSN 220
+ VH +G VL +ML +K ++ R IL ++ R GG N
Sbjct: 779 TVVHASGKLLVLDKMLNEIKKKSLRVILLFQSDRAGGNKMGN 820
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -1
Query: 374 STGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSGHLESEA 234
ST CPR KPS P+ A +R S T S R C G + A
Sbjct: 3 STKCPRRKPSRPAGAALRKTGSAPS-PTRSCTTSCRSCGRGRWRAPA 48
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 373 VQVAHGLSLQYRPWQWSELCSH 308
V + HGL + Y W W EL S+
Sbjct: 119 VLLFHGLMVAYWEWSWDELASY 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,686,473
Number of Sequences: 37544
Number of extensions: 389196
Number of successful extensions: 1112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -