Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00308X
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               151   4e-37
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 40   0.002
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   1.7  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   8.8  
SB_54616| Best HMM Match : zf-AD (HMM E-Value=0.038)                   27   8.8  
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)         27   8.8  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  151 bits (366), Expect = 4e-37
 Identities = 70/84 (83%), Positives = 77/84 (91%)
 Frame = +1

Query: 256 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 435
           EV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G PI IPVG ETLGRIIN
Sbjct: 100 EVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPITIPVGPETLGRIIN 159

Query: 436 VIGEPIDERGPIPTDKTAAIHAEA 507
           VIGEPIDERGP+ TDK AAIHAEA
Sbjct: 160 VIGEPIDERGPVETDKRAAIHAEA 183



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +3

Query: 510 EFVDMSVQQEILVTGIKVVDLLAPYAKGGKI 602
           EFV+MS +QEIL TGIKVVDLLAPYAKGGKI
Sbjct: 185 EFVEMSTEQEILETGIKVVDLLAPYAKGGKI 215



 Score = 31.1 bits (67), Expect = 0.72
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 212 DVQFEDNLPPILNALRCKIDLP 277
           DVQF+++LPPILNAL  +   P
Sbjct: 85  DVQFDEDLPPILNALEVENRTP 106


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 468
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGP 59


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 540 ILVTGIKVVDLLAPYAKGGKI 602
           +L TGIKV+DL+ PYAKGGKI
Sbjct: 2   VLFTGIKVIDLIEPYAKGGKI 22


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 25/77 (32%), Positives = 29/77 (37%)
 Frame = -1

Query: 467 GPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATS 288
           GP SS+  P T    P    PTG+ M  P S    P   P  P M       SP     +
Sbjct: 684 GPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGMGTHPQQVSP---GQT 737

Query: 287 STRRGDRFCTSGHLESE 237
           S    D F   G +E E
Sbjct: 738 SILADDGFSGVGFVEQE 754


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 446 SPITLMMRPRV-SAPTGIRMGEPESSTG 366
           S +T   +P   SAPTGI  G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 382 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 477
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 398 SRWELKPSDASSM*SANRLTNAVPSPPTRLLLFMLKLRVCRHVC 529
           S W+L+  D + +    R+T+A  +      +  L LRVC H+C
Sbjct: 111 SMWDLESCDLARVMLIVRITHATFASLKLRRISKLSLRVCIHIC 154


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 361 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 468
           GQP  D+G P     G   +  G+++N  GEP++  GP
Sbjct: 94  GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 238 RQVIFELHIYHSTDNGNNLTLAF 170
           RQ     H +HS D+ NNLT AF
Sbjct: 518 RQPYVTTHNHHSHDHNNNLTTAF 540


>SB_54616| Best HMM Match : zf-AD (HMM E-Value=0.038)
          Length = 607

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 448 PIDERGPIPTDKTAAIHAEAQS 513
           P++ R P+PT++ A + AE Q+
Sbjct: 191 PVEVRAPVPTEEQALVPAEVQA 212


>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
          Length = 1935

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 448 PIDERGPIPTDKTAAIHAEAQS 513
           P++ R P+PT++ A + AE Q+
Sbjct: 191 PVEVRAPVPTEEQALVPAEVQA 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,242
Number of Sequences: 59808
Number of extensions: 419230
Number of successful extensions: 1040
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)