Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00307
(703 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 149 7e-35
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 124 2e-27
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 124 2e-27
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 111 2e-23
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 101 2e-20
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 100 3e-20
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 96 6e-19
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 94 3e-18
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 91 2e-17
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 87 3e-16
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 85 1e-15
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 83 6e-15
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 72 2e-11
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 71 4e-11
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 67 3e-10
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 66 1e-09
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 61 2e-08
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 55 1e-06
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 48 3e-04
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 47 5e-04
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 47 5e-04
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 45 0.002
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 43 0.008
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 42 0.019
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 42 0.019
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 40 0.045
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 40 0.059
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 40 0.059
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 38 0.32
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 37 0.42
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 37 0.42
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 37 0.55
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 37 0.55
UniRef50_Q55BN0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 33 5.1
UniRef50_A0IK20 Cluster: Transcriptional regulator, LacI family;... 33 6.8
UniRef50_Q1DMF8 Cluster: Predicted protein; n=1; Coccidioides im... 33 6.8
UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular org... 33 9.0
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 149 bits (361), Expect = 7e-35
Identities = 73/123 (59%), Positives = 93/123 (75%), Gaps = 2/123 (1%)
Frame = +3
Query: 210 IEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 389
++G+ F ++ DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQ
Sbjct: 62 LKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQ 121
Query: 390 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQ--QLRSEQSERKCVKSLHATS 563
TLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQ Q+++ +++ + TS
Sbjct: 122 TLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITS 181
Query: 564 LTL 572
L
Sbjct: 182 TDL 184
Score = 107 bits (258), Expect = 2e-22
Identities = 49/55 (89%), Positives = 52/55 (94%)
Frame = +1
Query: 88 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ
Sbjct: 21 VVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQ 75
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Frame = +2
Query: 509 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
+Q++ IR KM II R++T+++L+ VV KL+PDSIAKDIEKAC +Y
Sbjct: 162 SQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVY 208
Score = 34.3 bits (75), Expect = 2.9
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 649 PLRDVCIRKVKVLKRPRF 702
PL DV IRKVKVLK+PRF
Sbjct: 209 PLHDVYIRKVKVLKKPRF 226
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 124 bits (299), Expect = 2e-27
Identities = 58/92 (63%), Positives = 69/92 (75%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D ++++RK RL AE VQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y L
Sbjct: 471 DEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTL 530
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERK 536
R+FCI FT K +KTCYAQ + Q RK
Sbjct: 531 RLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRK 562
Score = 95.5 bits (227), Expect = 1e-18
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +1
Query: 94 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQA 255
DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQA
Sbjct: 417 DPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQA 470
Score = 54.0 bits (124), Expect = 3e-06
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +2
Query: 506 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
++Q+R IR+KM EI+T T+ +L+E+V K IP+SI ++IEKA IY
Sbjct: 553 SSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIY 600
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 124 bits (299), Expect = 2e-27
Identities = 57/93 (61%), Positives = 72/93 (77%)
Frame = +3
Query: 267 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 446
E +FRKF+LI E VQG+N L NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+
Sbjct: 78 EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRL 137
Query: 447 FCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVK 545
FC+GFT K + RKT YAQ + Q +K ++
Sbjct: 138 FCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMME 170
Score = 99.5 bits (237), Expect = 7e-20
Identities = 44/55 (80%), Positives = 51/55 (92%)
Frame = +1
Query: 88 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
+VDPF++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ
Sbjct: 21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQ 75
Score = 73.3 bits (172), Expect = 5e-12
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = +2
Query: 512 QVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
QVR IRKKM EI+TR+V ++L+EVVNKLIPDSI KDIEKAC IY
Sbjct: 160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIY 205
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 111 bits (267), Expect = 2e-23
Identities = 55/100 (55%), Positives = 68/100 (68%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D + FRK +L AE V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY L
Sbjct: 75 DESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFL 134
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVKSLHAT 560
RVF I FT K ++KT YA+ R + +K V L T
Sbjct: 135 RVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTET 174
Score = 81.4 bits (192), Expect = 2e-14
Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 4/58 (6%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK 73
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/35 (45%), Positives = 28/35 (80%)
Frame = +2
Query: 509 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSI 613
++V+AIRKKM +I+T V++++L+ VV+ LI S+
Sbjct: 158 SRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSL 192
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 101 bits (241), Expect = 2e-20
Identities = 51/90 (56%), Positives = 61/90 (67%)
Frame = +3
Query: 276 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 455
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 456 GFTNKDSLSQRKTCYAQQLRSEQSERKCVK 545
FT K Q+ YAQ R ++ + V+
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIKKLRAEIVE 95
Score = 42.7 bits (96), Expect = 0.008
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 509 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
T+++ +R ++ E++ R+V +L+ VV KLIPDSI +D I+
Sbjct: 84 TRIKKLRAEIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIF 130
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 100 bits (240), Expect = 3e-20
Identities = 47/103 (45%), Positives = 66/103 (64%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D + +FRK +L + VQG+N L NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+L
Sbjct: 76 DEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLL 135
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVKSLHATSLT 569
R+F I T + +KT YA + RK + + + T
Sbjct: 136 RLFAIAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREAST 178
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1
Query: 94 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
DPF RKDWY +KAP+ F+ R VG TLVNR+ G K A++ LKGR+FEVSLADLQ
Sbjct: 22 DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQ 74
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/48 (52%), Positives = 37/48 (77%)
Frame = +2
Query: 506 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
++Q+RAIR+KM EII R+ + L+++ NKLIP+ I ++IEKA GIY
Sbjct: 158 SSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIY 205
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 96.3 bits (229), Expect = 6e-19
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Frame = +3
Query: 186 GNENCFGRIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 365
GN I+G+ S D ++++RK +L+ + V GRN +F+G+D+T D+L
Sbjct: 55 GNRIASEEIKGRVVESTLA-DLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRL 113
Query: 366 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL---SQRKTCYAQQLRSEQSERK 536
M++KWQTLIEA +D KT DGY++RVF + FT K S S TCYA+ + RK
Sbjct: 114 CSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRK 173
Score = 68.5 bits (160), Expect = 1e-10
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
+DP +RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LADL+
Sbjct: 23 IDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK 76
Score = 33.5 bits (73), Expect = 5.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 470 GLLEPTQDVLRPATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
G T ++QVRAIR+K+ IT + + E LI + K IEK I+
Sbjct: 152 GKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIF 211
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 94.3 bits (224), Expect = 3e-18
Identities = 44/89 (49%), Positives = 65/89 (73%)
Frame = +3
Query: 285 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 464
++ E V G++ L FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+FCIGFT
Sbjct: 86 YKFKCEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRIFCIGFT 145
Query: 465 NKDSLSQRKTCYAQQLRSEQSERKCVKSL 551
++ S +KT YA+ + ++ RK + +L
Sbjct: 146 SRKSNQIKKTSYAKSAQIKKI-RKIMNNL 173
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/54 (61%), Positives = 43/54 (79%)
Frame = +1
Query: 88 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 249
I +PF++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LADL
Sbjct: 22 IAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADL 75
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 91.5 bits (217), Expect = 2e-17
Identities = 40/113 (35%), Positives = 62/113 (54%)
Frame = +3
Query: 171 CQPYPGNENCFGRIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 350
C G + G+ F + E ++RK R + VQGRN+L FH M++
Sbjct: 49 CNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEV 108
Query: 351 TTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQQ 509
TTDK+ +++KW T +E ++VKT DGY +R+F + FT + Q + CYA+Q
Sbjct: 109 TTDKMANLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQ 161
Score = 70.1 bits (164), Expect = 5e-11
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +1
Query: 94 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 249
+ RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL
Sbjct: 23 ETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADL 74
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/54 (72%), Positives = 47/54 (87%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
VD ++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ
Sbjct: 22 VDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQ 75
Score = 37.1 bits (82), Expect = 0.42
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 267 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTD 359
E +FRKF+LI E VQG+ L NF M L+ D
Sbjct: 78 EVAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/55 (72%), Positives = 47/55 (85%)
Frame = +1
Query: 88 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
+VDPF++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+ GRVFEVSLADLQ
Sbjct: 21 VVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQ 72
Score = 67.7 bits (158), Expect = 3e-10
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +2
Query: 524 IRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
IRKKM EI+TR+V ++L+EVVNKLIPDSI KD+EKAC IY
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIY 152
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/54 (50%), Positives = 37/54 (68%)
Frame = +3
Query: 267 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 428
E +FRKF+LI E VQG+N L NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 75 EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 83.0 bits (196), Expect = 6e-15
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = +3
Query: 267 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 446
+ ++RK +LI + V+G +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+
Sbjct: 77 QMAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRI 136
Query: 447 FCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVK 545
F I FT QRKT YAQ+ + + +K V+
Sbjct: 137 FVIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVE 169
Score = 62.9 bits (146), Expect = 7e-09
Identities = 26/54 (48%), Positives = 38/54 (70%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
+DP RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLADLQ
Sbjct: 19 IDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQ 72
Score = 36.3 bits (80), Expect = 0.73
Identities = 15/47 (31%), Positives = 31/47 (65%)
Frame = +2
Query: 509 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
+Q++ IRKK+ EI+ ++V+ + +++ +S+AK+I KA I+
Sbjct: 158 SQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQESLAKEIGKATRTIF 204
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 71.7 bits (168), Expect = 2e-11
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +3
Query: 279 RKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIG 458
RKF+LI E ++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G
Sbjct: 67 RKFKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVG 125
Query: 459 FTNKDSLSQRKTCYAQQLRSEQSER 533
+T + T YA+QL Q ++
Sbjct: 126 YTTNVT-----TRYARQLVCAQYQQ 145
Score = 56.8 bits (131), Expect = 5e-07
Identities = 29/49 (59%), Positives = 34/49 (69%)
Frame = +1
Query: 106 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
+KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQ 60
Score = 45.2 bits (102), Expect = 0.002
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 557 DVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
D ++L+EV+NKL+PD++ KD+EKAC IY
Sbjct: 158 DQRRTDLKEVLNKLVPDNVGKDVEKACQFIY 188
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 70.5 bits (165), Expect = 4e-11
Identities = 36/97 (37%), Positives = 56/97 (57%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D ++R F G V F GM LT DKL +++K++T+I+A++D KT DG++L
Sbjct: 73 DLSHAYRLFSW-RSIAAGSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFIL 131
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVKSL 551
R+F IGFT K + S + YA ++ Q +K+L
Sbjct: 132 RLFTIGFTKKLANSHKNHTYANSHKARQVRDVMIKAL 168
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 67.3 bits (157), Expect = 3e-10
Identities = 36/86 (41%), Positives = 49/86 (56%)
Frame = +3
Query: 279 RKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIG 458
RKF ++G + F GM+LT+DK + M+KKW TLIEA D+ DG V RVF +G
Sbjct: 34 RKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMG 93
Query: 459 FTNKDSLSQRKTCYAQQLRSEQSERK 536
T + +KTCY + E+ RK
Sbjct: 94 VTRRHPGYVKKTCYVKH-SDEKKIRK 118
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +3
Query: 282 KFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGF 461
KF L + V L NFHGMD+T K + +K I+ +D+ TTDGY+LRVF I F
Sbjct: 83 KFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAF 142
Query: 462 TNKDSLSQRKTCYAQ 506
T++ +RK C+ +
Sbjct: 143 TDRFRFQRRKNCHVK 157
Score = 57.6 bits (133), Expect = 3e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +1
Query: 94 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 249
DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L DL
Sbjct: 20 DPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDL 71
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 61.3 bits (142), Expect = 2e-08
Identities = 27/68 (39%), Positives = 39/68 (57%)
Frame = +3
Query: 333 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQQL 512
FHG+ LT DK+ ++KKW TLIE ++ KT DGY L++F I + K + KT Y
Sbjct: 96 FHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSS 155
Query: 513 RSEQSERK 536
+ R+
Sbjct: 156 QKRALRRR 163
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 55.2 bits (127), Expect = 1e-06
Identities = 29/75 (38%), Positives = 46/75 (61%)
Frame = -2
Query: 246 ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFF 67
ISQGN ++S L+ FR + S + +K A++ AE RR L+++P+ S+ V LLL++ F
Sbjct: 82 ISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDRRRLNVIPVLLSKRVGCLLLSSLF 141
Query: 66 TALRQAFIFPDRHVQ 22
L +FPD H +
Sbjct: 142 -PLGNPLVFPDDHCE 155
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D ++ K L V G + G +LTTD +R +VK+ + I+AN+DV+T DG+V+
Sbjct: 58 DMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVI 117
Query: 441 RVFCIGFTNKDSLSQR 488
RV FT K + S +
Sbjct: 118 RVKPTCFTIKRARSSQ 133
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 46.8 bits (106), Expect = 5e-04
Identities = 24/76 (31%), Positives = 45/76 (59%)
Frame = +3
Query: 306 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQ 485
VQG N F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV + ++ S
Sbjct: 77 VQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKVLTVPDRRIKSS 136
Query: 486 RKTCYAQQLRSEQSER 533
KT ++++ +E+
Sbjct: 137 IKTEIRKKIQEYLTEK 152
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 282 KFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGF 461
K + V+G L F G++LT D +R +V+K + + A +VKT DG V+R+ +G
Sbjct: 74 KLKFQIHRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAVLGI 133
Query: 462 T 464
T
Sbjct: 134 T 134
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 45.2 bits (102), Expect = 0.002
Identities = 30/89 (33%), Positives = 47/89 (52%)
Frame = +3
Query: 204 GRIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKK 383
G++ G+ S G T D + FR+ E + G + +F G +LT D +R +VK+
Sbjct: 40 GKMIGRVMESTLGDVTGDWTKQNIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKR 97
Query: 384 WQTLIEANIDVKTTDGYVLRVFCIGFTNK 470
+ I+AN+ V T DG+ +RV I T K
Sbjct: 98 RTSKIDANVVVTTKDGFKVRVKPIVLTVK 126
Score = 37.9 bits (84), Expect = 0.24
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQATLTRK 270
VD F K+WY V AP+ F++ +G TL + G I GRV E +L D+ T++
Sbjct: 9 VDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQ 61
Query: 271 GL 276
+
Sbjct: 62 NI 63
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 42.7 bits (96), Expect = 0.008
Identities = 25/95 (26%), Positives = 46/95 (48%)
Frame = +3
Query: 207 RIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 386
++ G++ + T+D + +++K V G N F +LT + L + ++
Sbjct: 43 KVVGRTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRR 102
Query: 387 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 491
+ IE +DV T DGY LRV + FT + + +K
Sbjct: 103 TSKIEDIVDVTTADGYKLRVKSVVFTVRRCKTSQK 137
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 41.5 bits (93), Expect = 0.019
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 88 IVDPFTRKDWYDVKAPSMFSKRQVGTT 168
++D F++KDWYDVKA +MF+ R +G T
Sbjct: 21 VIDQFSKKDWYDVKALAMFNIRNIGKT 47
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 41.5 bits (93), Expect = 0.019
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 306 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS-LS 482
V+G F G L D +R +V++ + I+ IDV T DGY +RV + FT + + S
Sbjct: 66 VEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTRRAKTS 125
Query: 483 QRKTCYAQQLR-SEQSERKC 539
Q++ + + E++ ++C
Sbjct: 126 QQRAIRKEMFKVIEENAKEC 145
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 40.3 bits (90), Expect = 0.045
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 207 RIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 386
++ G++ + G T D+ A + F++ V F +LT D LR +V++
Sbjct: 39 QVVGRTITTTLGELTGDSGANNTKLTFKITD--VGSDTAYTEFIKYELTRDYLRSLVRRG 96
Query: 387 QTLIEANIDVKTTDGYVLRVFCIGFTNKDS-LSQRK 491
+ +EA+I V TTD Y +RV + T K + SQ K
Sbjct: 97 ASKVEASITVLTTDDYRIRVQPVALTTKKADRSQEK 132
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 39.9 bits (89), Expect = 0.059
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = +2
Query: 590 NKLIPDSIAKDIEKACHGIY 649
NKLIPDSI KDIEKAC IY
Sbjct: 1 NKLIPDSIGKDIEKACQSIY 20
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 39.9 bits (89), Expect = 0.059
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Frame = +3
Query: 183 PGNE--NCFGRIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTT 356
P N+ N GRI S R T++ + F++ + V G N F G D T
Sbjct: 42 PANDPANLIGRISEISLRDL----TNEHSKHMTRMYFKV--DGVSGNNATSQFVGHDTTR 95
Query: 357 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQQLRSEQSERK 536
+ L+ V++ ++ I A ++V+T DG+ +RV + T + KT ++R EQ ++
Sbjct: 96 EYLKSQVRRRRSKINAIVEVRTKDGFKVRVKALVLTAVRARDHHKT--EIRVRMEQIIKE 153
Query: 537 CVK 545
K
Sbjct: 154 MAK 156
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 37.5 bits (83), Expect = 0.32
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +3
Query: 306 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQ 485
V+G F G +L D +R + ++ + + +V T DGY LRV + FT + +
Sbjct: 70 VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRVTAMAFTRQRCKTS 129
Query: 486 RKTCYAQQLRSEQSERKCVKS 548
+K+ +++ E E+K +S
Sbjct: 130 QKSA-IRKVMQEIVEQKARES 149
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 37.1 bits (82), Expect = 0.42
Identities = 28/94 (29%), Positives = 49/94 (52%)
Frame = +3
Query: 189 NENCFGRIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 368
+E+ GRI + + F G D +FR ++E V G++ L F G T+ +R
Sbjct: 51 DEHIIGRIYEMTQQEFNG----DFTKMHVMLRFR-VSETV-GQDALTTFVGHHHQTNHIR 104
Query: 369 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNK 470
+++++ I+ IDV T DGY++R+ + T K
Sbjct: 105 RQIRRYRGKIDDVIDVVTEDGYLVRIKPLIITQK 138
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 37.1 bits (82), Expect = 0.42
Identities = 24/96 (25%), Positives = 44/96 (45%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D + + K R + V G F G TTD +R M+++ + I+A+ VKT D +
Sbjct: 59 DFSKQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKV 118
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVKS 548
++ + T + + S ++ Q + +E KS
Sbjct: 119 KLHVLAVTTRRAKSSQQKYMRQVINDLLAETAAEKS 154
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 36.7 bits (81), Expect = 0.55
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 309 QGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 464
+G + F G +L+ D +R +V++ + I +D+ T DG+ LRV + T
Sbjct: 79 EGERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKTLALT 130
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 36.7 bits (81), Expect = 0.55
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 207 RIEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 386
++ G++ + G T+D + F++ V + F +LT D LR +V++
Sbjct: 39 KVLGRTIETTLGELTNDASENNTKLTFKI--NEVASDSAYTEFIRHELTRDYLRSLVRRG 96
Query: 387 QTLIEANIDVKTTDGYVLRVFCIGFTNKDS-LSQRK 491
+ +EA I V TTD Y +++ + T K + SQ K
Sbjct: 97 SSKVEAYITVLTTDDYRVQIQPVAVTTKKADASQEK 132
>UniRef50_Q55BN0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1662
Score = 33.9 bits (74), Expect = 3.9
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 437 STCLLHWFHQ*GLLEPTQDVLRPATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 616
ST + H Q +EP +++L P Q ++ K+ IIT + T S+ +++NK I
Sbjct: 419 STIVHHLLSQSASIEPIKELLFPQVQSNTLKSKIISIIT-EATISKTMQLLNKYPNQIIE 477
Query: 617 KDIE 628
IE
Sbjct: 478 NQIE 481
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 33.5 bits (73), Expect = 5.1
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D +++ K + V + F + + + LR +V++ + + +DVKT+DGYV
Sbjct: 58 DPQQNNYKIYFQIDKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVF 117
Query: 441 RVFCIGFTNKDSLSQRK 491
R+ + T + + +K
Sbjct: 118 RLKVLALTYRHLNTSKK 134
>UniRef50_A0IK20 Cluster: Transcriptional regulator, LacI family;
n=1; Serratia proteamaculans 568|Rep: Transcriptional
regulator, LacI family - Serratia proteamaculans 568
Length = 333
Score = 33.1 bits (72), Expect = 6.8
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = -1
Query: 457 PMQKTRRTYPSVVF-TSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINL-N 284
P R P +F T+ +M V ++ +H SL + + + + + + L +
Sbjct: 232 PQLLAARPAPQAIFCTADSMAMGVMDYIRLHTSLRIPQDVAVYGFDDIPMAAWPSYQLTS 291
Query: 283 LRKDLSASVSLVDQPGKLRKLFPSILPKQFSFP 185
+R+D+SA ++ + Q +LR P P+Q + P
Sbjct: 292 VRRDISAMIAAIVQLIELRSSSPQAAPQQVTIP 324
>UniRef50_Q1DMF8 Cluster: Predicted protein; n=1; Coccidioides
immitis|Rep: Predicted protein - Coccidioides immitis
Length = 628
Score = 33.1 bits (72), Expect = 6.8
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = -1
Query: 592 VHHLPEFRVSDVACNDFTHFLSDCSDLSCWA*HVLRWLK-ESLLVKPMQKTRRTYPSVVF 416
VH F + D + + S + L+ ++ H+ +K + ++ QK RRTYP +
Sbjct: 457 VHGSRGFTLQDYTISSPWQYPSVLAYLAPFSDHLQEVIKTHNNILAQKQKERRTYPVQIS 516
Query: 415 --TSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRP 311
T + ++ H ++ + R +PW+L TLRP
Sbjct: 517 LDTRQIPNISTRHIVSFVHWDAENRRVPWRLAETLRP 553
>UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular
organisms|Rep: L-Amino-acid oxidase - Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 434
Score = 32.7 bits (71), Expect = 9.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 343 WTSQPISSGGWL--KNGRLSSKPTLM*RQPMDTFYVSSALVSPI 468
W + P S GGW+ + G L+ LM RQP + + A ++PI
Sbjct: 363 WANDPFSKGGWMHHRPGNLTQAAPLM-RQPHGRIHFAGADIAPI 405
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,969,521
Number of Sequences: 1657284
Number of extensions: 14748236
Number of successful extensions: 42268
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42261
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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