Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00307
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    98   9e-22
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    96   4e-21
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   2.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   3.4  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   3.4  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   7.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.9  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.9  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 44/82 (53%), Positives = 61/82 (74%)
 Frame = +3

Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
           D E SFRK +L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ 
Sbjct: 76  DEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLC 135

Query: 441 RVFCIGFTNKDSLSQRKTCYAQ 506
           R+F IGFT++     +KT YAQ
Sbjct: 136 RIFVIGFTSRRVNQVKKTTYAQ 157



 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 37/55 (67%), Positives = 45/55 (81%)
 Frame = +1

Query: 88  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ 74



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 20/48 (41%), Positives = 32/48 (66%)
 Frame = +2

Query: 506 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
           ++Q+RAI +KM ++I        ++E+V KLIP+ I + IEKA + IY
Sbjct: 158 SSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIY 205



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 649 PLRDVCIRKVKVLKRPR 699
           PL++V +RKVK+LK P+
Sbjct: 206 PLQNVFVRKVKILKAPK 222


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 43/82 (52%), Positives = 61/82 (74%)
 Frame = +3

Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
           D E +FRK +L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ 
Sbjct: 76  DEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLC 135

Query: 441 RVFCIGFTNKDSLSQRKTCYAQ 506
           RVF IGFT + +   +KT YAQ
Sbjct: 136 RVFVIGFTRRRANQVKKTTYAQ 157



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +1

Query: 88  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ 74



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 20/48 (41%), Positives = 35/48 (72%)
 Frame = +2

Query: 506 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
           ++Q+RAIR+KM ++I    ++  +RE+V KLIP+ I ++IE+A   I+
Sbjct: 158 SSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIF 205



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 649 PLRDVCIRKVKVLKRPR 699
           PL++V +RKVK+LK P+
Sbjct: 206 PLQNVLVRKVKILKAPK 222


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 389 LPFFNHPPELIGCEVHAVEVAEHITSLHIFGD*SEFAERPFRVSVACRSARE 234
           L    H PEL+ C     +VA+H+TS       +    +P    VA  +A++
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTSHSGIKHITFIGSQPIAKLVAASAAKQ 232


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 366 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVK 545
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A +  ++  ER   +
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFADK-DTKLYERALQQ 853

Query: 546 SLHATS 563
           SL   S
Sbjct: 854 SLDTIS 859


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 294 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 425
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +3

Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIE-ANIDVKTTDGYV 437
           DAE + + F  I EY++  N        D T  K    + +W ++ E    +    D  +
Sbjct: 111 DAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDSIFEPVKSEFNLVDASL 167

Query: 438 LRVFCIGFTNKDSLSQRK 491
               C+   ++  L+  K
Sbjct: 168 GLAKCLAIKDEQELANIK 185


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 447 FCIGFTNKDSLSQRKTCYAQQLRSEQS 527
           FC G  NKD++   K C+   + S  S
Sbjct: 475 FCDGIVNKDTVMTSKACFVGNIVSMAS 501


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 345 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 443
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,865
Number of Sequences: 5004
Number of extensions: 61495
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)