Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00307
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 125 3e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 124 9e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 123 2e-28
09_02_0094 + 4196729-4197571 31 0.67
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.2
02_05_0723 + 31228782-31228994,31229098-31229193,31229469-312294... 28 6.2
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.3
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 125 bits (302), Expect = 3e-29
Identities = 58/95 (61%), Positives = 73/95 (76%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D ++++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+L
Sbjct: 76 DEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYML 135
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVK 545
R+FCIGFT + ++TCYAQ + Q RK V+
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/48 (45%), Positives = 35/48 (72%)
Frame = +2
Query: 506 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
A+Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+
Sbjct: 158 ASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIF 205
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 649 PLRDVCIRKVKVLKRPRF 702
PL++V +RKVK+LK P+F
Sbjct: 206 PLQNVFVRKVKILKAPKF 223
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 124 bits (298), Expect = 9e-29
Identities = 58/95 (61%), Positives = 72/95 (75%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D ++++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+L
Sbjct: 76 DEDQAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYML 135
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVK 545
R+FCIGFT + ++TCYAQ + Q RK V+
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/54 (79%), Positives = 50/54 (92%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 506 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
A+Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+
Sbjct: 158 ASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIF 205
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 649 PLRDVCIRKVKVLKRPRF 702
PL++V IRKVK+LK P+F
Sbjct: 206 PLQNVFIRKVKILKAPKF 223
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 123 bits (296), Expect = 2e-28
Identities = 57/95 (60%), Positives = 72/95 (75%)
Frame = +3
Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
D ++++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+L
Sbjct: 76 DEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYML 135
Query: 441 RVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCVK 545
R+FCIGFT + ++TCYAQ + Q RK V+
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/48 (45%), Positives = 35/48 (72%)
Frame = +2
Query: 506 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
A+Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+
Sbjct: 158 ASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIF 205
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 649 PLRDVCIRKVKVLKRPRF 702
PL++V +RKVK+LK P+F
Sbjct: 206 PLQNVFVRKVKILKAPKF 223
>09_02_0094 + 4196729-4197571
Length = 280
Score = 31.5 bits (68), Expect = 0.67
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = -1
Query: 544 FTHFLSDCSDLSCWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHL 365
FT FL CS + H L++ KES L +P Y +VF + + F+ +
Sbjct: 139 FTMFLEGCSPFGPFWDHYLQYWKES-LKRPRDVLFLRYEEIVFDPLKVVRDLAGFIGVPF 197
Query: 364 SLSVVRSMPWKLQSTLRPCTYSAIN 290
+ V+S Q +R C++ A++
Sbjct: 198 TEEEVKS--GVDQEVVRLCSFKALS 220
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 325 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 414
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>02_05_0723 +
31228782-31228994,31229098-31229193,31229469-31229492,
31229663-31229881,31229957-31230025,31230230-31230316,
31231122-31231226
Length = 270
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 561 SLTLNSGRW*TS*FLTPLPRTSRRPAMASTSARCLHP 671
SLT+ + R T+ L PL R RR + STSA L P
Sbjct: 20 SLTVKTSRVCTTAALPPLCRCGRRHLIGSTSATALLP 56
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 234 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 142
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,955,054
Number of Sequences: 37544
Number of extensions: 428207
Number of successful extensions: 1203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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