Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00307
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 75 4e-14
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_39686| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=3.6) 28 8.4
SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 75.4 bits (177), Expect = 4e-14
Identities = 33/47 (70%), Positives = 42/47 (89%)
Frame = +2
Query: 509 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
TQ++AIRKKM +IITR+V+ ++L+EVVNKLIPDSI KDIEK+C IY
Sbjct: 42 TQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIY 88
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +3
Query: 390 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQQLRSEQSERKCV 542
TLIEA +DVKTTDGY+LR+FCIGFT + +KT YA+ + + +K V
Sbjct: 2 TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV 52
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 649 PLRDVCIRKVKVLKRPRF 702
PL DV IRKVKVLK+P+F
Sbjct: 89 PLHDVHIRKVKVLKKPKF 106
>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.9 bits (64), Expect = 2.1
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = -1
Query: 580 PEFRVSDVACNDFTH-FLSDCSDL-SCWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSM 407
P R D C FTH + S L S + ++ + LVKPMQ RR V+ ++
Sbjct: 85 PTGRSGDWICKFFTHNAIMQISVLTSIFTLTIVSVERYHALVKPMQVGRRLTEDTVWYAV 144
Query: 406 LASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSLVDQPGKL 230
+AS T L L+V + K T + CT + + +++LS V + G L
Sbjct: 145 IASW------TASLILTVPSFVAIKFDETRKACT-GPFDFHTQENLSYMVIIFTVSGIL 196
>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 88 IVDPFTRKDWYDVKAPSMFSKRQ 156
+V+P+ KDW D SMFS RQ
Sbjct: 98 LVEPWRWKDWEDFTQSSMFSGRQ 120
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 249 TSDTDAERSFRKFRLIAEYVQGRNV---LCNFHGMD-LTTDKLRWMVKKWQTLIEANIDV 416
TSD+DA RK L+ + QG+ + N GM LT L ++ + L+E DV
Sbjct: 48 TSDSDALAEARKALLLMMHRQGKGLDLDAINASGMTALTQCALDGSLRGVKILLELGADV 107
Query: 417 KTTDGY 434
TD Y
Sbjct: 108 DKTDRY 113
>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 177 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 31
VD + + +++ D+ PIF + V LLL T FT L+ + DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 284 FAERPFRVSVACRSARETSKTLPFNPSEAIFVPWVRLTS 168
F ERP ++ R TS+T+P + + +P R TS
Sbjct: 307 FTERPATTDTTTQTTRATSQTIPTTRATSEAMPKTRATS 345
>SB_39686| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=3.6)
Length = 656
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 429 GYVLRVFCIGFTNKDSLSQRKTCYAQQLRSEQSE-RKCVKSLHATS 563
G +LR++CI + K ++++ AQQ+ EQ E K V H S
Sbjct: 538 GLLLRIYCISKSLKTCFCRQRSGQAQQIVLEQGESTKDVAMRHRNS 583
>SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 27.9 bits (59), Expect = 8.4
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = -3
Query: 437 NVSIGCLHINVGFDESLPFFNHPP-ELIGCEVHAVEVAEHITSLHIFGD*SEFAERPFRV 261
NV I + IN+ S+P H P +V+++ I +L G S F +
Sbjct: 202 NVQIPSVTINMALYVSIPSLTHSPLGFAQAQVYSIPFGMTIQNLR-SGSPSTFPQS---- 256
Query: 260 SVACRSARETSKTLPF-NPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQS 111
+VA + ET T+P N S+ VRLTS+ NI LT YQ+
Sbjct: 257 NVAEFAFGETVNTIPLANTSDIAVSVSVRLTSLYEPVKEANISCWLT-YQT 306
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,850,248
Number of Sequences: 59808
Number of extensions: 487885
Number of successful extensions: 1390
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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