Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00307
         (703 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   147   3e-37
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    25   3.0  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  147 bits (356), Expect = 3e-37
 Identities = 72/123 (58%), Positives = 92/123 (74%), Gaps = 2/123 (1%)
 Frame = +3

Query: 210 IEGKSFRSFPG*STSDTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 389
           ++G+ F        ++ DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MV KWQ
Sbjct: 62  LKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQ 121

Query: 390 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQ--QLRSEQSERKCVKSLHATS 563
           TLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQ  Q+++ +++   +     TS
Sbjct: 122 TLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITS 181

Query: 564 LTL 572
             L
Sbjct: 182 TDL 184



 Score =  105 bits (252), Expect = 1e-24
 Identities = 48/55 (87%), Positives = 51/55 (92%)
 Frame = +1

Query: 88  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 252
           +VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ
Sbjct: 21  VVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQ 75



 Score = 62.1 bits (144), Expect = 2e-11
 Identities = 27/47 (57%), Positives = 38/47 (80%)
 Frame = +2

Query: 509 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
           +Q++ IR KM  II R++T+++L+ VV KL+PDSIAKDIEKAC  +Y
Sbjct: 162 SQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVY 208



 Score = 34.3 bits (75), Expect = 0.004
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 649 PLRDVCIRKVKVLKRPRF 702
           PL DV IRKVKVLK+PRF
Sbjct: 209 PLHDVYIRKVKVLKKPRF 226


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +3

Query: 180 YPGNENCFGRIEGKSFRSFPG*STSDTDAERSF 278
           YPG EN       KS R  P      TD E SF
Sbjct: 124 YPGEENVIKVYSSKSLRKSP--QAHTTDDESSF 154



 Score = 23.0 bits (47), Expect = 9.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 304 YSAINLNLRKDLSASVSLVDQPGKLRKLFPSIL 206
           Y   N NLRKDL  +V ++   G +  L P IL
Sbjct: 174 YYGTNGNLRKDLGGNVIVI---GAVFALAPQIL 203


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 762,319
Number of Sequences: 2352
Number of extensions: 15943
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)