Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00307
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   106   2e-23
Z81069-2|CAB02992.1|  310|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    28   7.4  
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    28   7.4  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  106 bits (254), Expect = 2e-23
 Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
 Frame = +3

Query: 261 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 440
           ++E  FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY L
Sbjct: 74  NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTL 133

Query: 441 RVFCIGFTNKDSLSQRKTCYAQ--QLRSEQSE 530
           RVF I FT K     +KT Y +  ++R  +SE
Sbjct: 134 RVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSE 165



 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/53 (83%), Positives = 50/53 (94%)
 Frame = +1

Query: 91  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 249
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL 72



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = +2

Query: 509 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIY 649
           +++R IR +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +Y
Sbjct: 157 SKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLY 203



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +1

Query: 649 PLRDVCIRKVKVLKRPR 699
           PL++V IRKVK++KRP+
Sbjct: 204 PLQEVYIRKVKIIKRPK 220


>Z81069-2|CAB02992.1|  310|Caenorhabditis elegans Hypothetical
           protein F25H9.2 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
 Frame = +3

Query: 306 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY--VLRVFCIGFTNKDSL 479
           V G+N+ CN H + + ++ L  ++   +      + +     Y   LR+  + + + D+L
Sbjct: 150 VDGKNIYCNKHILAMNSEVLMELLFPDEDHDVNELQLSNDFEYEPTLRIVKVFYNDGDAL 209

Query: 480 S----QRKTCYAQQLRSEQSERKCVKSLHATSL 566
           +         YA +L+SE + ++C + +  T L
Sbjct: 210 TGDNVDETLEYATKLKSENARQRCERWISKTQL 242


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 652 EVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTH 536
           E   ++GL+   GNG++ +L      FRV DV C +  H
Sbjct: 180 EQHMISGLIPAFGNGIKEKLED--GGFRVLDVGCGEGFH 216


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 337 WKLQSTLRPCTYSAINLNLRKDLSASVSLVDQPGKLRKLFPSILPKQFSFPGYG 176
           WK    LRP T +  + NL K+  +S S    PG  +   P +  K  +  G G
Sbjct: 33  WK---NLRPQTATGADTNLSKNTKSSDSANSSPGSRKSTSPPVSKKGIAQSGKG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,518,898
Number of Sequences: 27780
Number of extensions: 354405
Number of successful extensions: 1026
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)