Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00306
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    40   4e-04
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    28   1.1  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   2.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   4.4  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.7  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   7.7  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   7.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +2

Query: 278 CPQRDPYYPDR--------FIGHEDCLCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSAS 433
           CPQ  P+Y +R        F   EDCL LN++ P       G PV++F+HGG  + G+  
Sbjct: 59  CPQ--PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPL 116

Query: 434 AY 439
            Y
Sbjct: 117 HY 118



 Score = 31.9 bits (69), Expect = 0.089
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 165 YTFFGIRYAEPPLGPRRFQRP 227
           + F GIRYA+PP+G  R++RP
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRP 39



 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 520 DERDAAGNVGLFDLHAVMAWIQDYITLFGGDPTRVVVMGQGSGWSAASLF 669
           +E   + N G +D    + W   +I  FGG+   + V G  +G S ++LF
Sbjct: 157 EEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAG-SYSALF 205


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 388 YWATSFIARHFGSEYIETQTIFVTNKSVGIVRVSLRT 278
           YW T F+    G ++I+ Q +F+T     I+  S  T
Sbjct: 396 YWFTVFLVEKLGRKWIQLQGLFITGLMFAILAGSWDT 432


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 508 NLSTDERDAAGNV-GLFDLHAVMAWIQDYITLFGGDPT 618
           N +T+E D    +  L DL+ V  W++  +T  G + T
Sbjct: 159 NAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENT 196


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 673 C*KVMQRSNPNLGPLQQLELDH 608
           C  VM RSNP L    Q  +DH
Sbjct: 432 CISVMNRSNPTLLEFMQYHIDH 453


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +2

Query: 344 VFAPKMPGDERGCPVVFFVHGGNYKSG---SASAYGGQHLTQKDTILVTAQYRL 496
           +F P     E G P   + HGG +  G   + +++      Q   ++V   YRL
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL 141


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = -2

Query: 630 YNNSSWITTKKRYIVLNPGHYSM 562
           +N + WI++++R+ +++PG  S+
Sbjct: 56  FNGTEWISSRERFSLVSPGWASI 78


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 364 RHFGSEYIETQTIFVTNKSV 305
           RHFG++Y++  T + TNK V
Sbjct: 442 RHFGAQYVDCDTDY-TNKGV 460


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 534 CISFISTKVPKDPKRYCAVTNIVSF*VRCWPPYADAE 424
           C SF  TK  KD  R    +N +   +  W  Y D +
Sbjct: 269 CCSFSLTKAEKDLVRATEFSNSMLISIEKWAKYCDVD 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,805
Number of Sequences: 5004
Number of extensions: 57218
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)