Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00306
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0955 - 33056171-33057256 34 0.091
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 33 0.28
09_04_0239 + 15954995-15956242 32 0.49
07_03_0503 + 18839863-18841209 32 0.49
09_04_0413 + 17372852-17373787 31 1.1
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 30 1.5
09_04_0240 + 15958110-15958305,15959586-15960763 30 1.5
08_02_0945 - 22871753-22872232,22872474-22872526,22872611-228728... 30 1.5
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 30 1.5
09_04_0421 + 17417851-17418840 30 2.0
07_03_0659 + 20395422-20396765 30 2.0
01_01_0379 - 2956396-2957409 30 2.0
08_02_0997 + 23409932-23410894 29 2.6
09_04_0410 + 17362751-17363698 29 4.5
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 29 4.5
09_04_0409 + 17359459-17360622 28 6.0
06_01_0781 + 5846501-5847490 28 6.0
01_06_1701 - 39290537-39291077,39292110-39292801 28 6.0
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561... 28 7.9
>02_05_0955 - 33056171-33057256
Length = 361
Score = 34.3 bits (75), Expect = 0.091
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 365 GDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 496
GD R P+V +VHGG + +GSASA Y + ++V+ YRL
Sbjct: 85 GDGRRLPLVVYVHGGAFCTGSASARMFHDYAESLSARAAAVVVSVDYRL 133
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 353 PKMPGDERGCPVVFFVHGGNYKSGSASAYGGQH 451
P PG +G P V +GGN + G AYGG +
Sbjct: 319 PTYPGSNQGAPGVNPGYGGNNRQGPGPAYGGDN 351
>09_04_0239 + 15954995-15956242
Length = 415
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +2
Query: 374 RGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 496
R P+V +VHGG + SGSASA Y + ++V+ YRL
Sbjct: 92 RRLPLVVYVHGGAFCSGSASAPPFHRYAESLAARAAAVVVSVDYRL 137
>07_03_0503 + 18839863-18841209
Length = 448
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 344 VFAPKMPGDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 496
+F P G+ R P+V + HGG + +GSA Y + ++V+ +YRL
Sbjct: 82 LFLPGGGGEGRRLPLVLYFHGGAFVTGSAFGRLFHRYAASLAARAGALVVSVEYRL 137
>09_04_0413 + 17372852-17373787
Length = 311
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 496
L + VF P P + PV+ F HGG + SA Y + V+ +YRL
Sbjct: 56 LSVRVFLPARPDPSKKLPVLVFFHGGAFVIESAFSTTYHGYAASLAAAAGVVAVSVEYRL 115
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +2
Query: 17 CSADLVSSRYSCCRRCAGVTSGTRCSCSFHPAT---WQKREARGSQRRQTRL 163
C + + C AG TS RC F PA+ W RE G RR L
Sbjct: 305 CDSYAKCGAFGLCDSNAGATSICRCVKGFSPASPAEWSMREYSGGCRRDVAL 356
>09_04_0240 + 15958110-15958305,15959586-15960763
Length = 457
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +2
Query: 374 RGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 496
R P+V +VHGG + +GSASA Y + ++V+ YRL
Sbjct: 114 RRLPLVVYVHGGAFCTGSASARMFHDYAESLSARAAAVVVSVDYRL 159
>08_02_0945 -
22871753-22872232,22872474-22872526,22872611-22872864,
22873048-22873086,22873160-22873374,22873467-22873667,
22874876-22875080,22875487-22875584
Length = 514
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +3
Query: 162 YYTFFGIRYAEPPLGPRRFQRPXRQYLASELTPRDNAYRVRNETLTIPTDLLVTKIVCVS 341
Y TFF RY PL RF+ P + PR+ AY++ N+ L + + + V+
Sbjct: 18 YSTFFASRYVRDPL--PRFRMP------EQSIPREAAYQIINDELMLDGNPRLNLASFVT 69
Query: 342 MYSLPKC 362
+ P+C
Sbjct: 70 TWMEPEC 76
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 338 LNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAYG---GQHLTQKDTILVTAQYRLGSLG 508
L+++ PK R CPVV FV GG + G A+G G+ L ++ I+ YR G
Sbjct: 132 LDLYIPK--DINRPCPVVAFVTGGAWIIG-YKAWGSLLGRRLAERGIIVACIDYRNFPQG 188
Query: 509 TL 514
T+
Sbjct: 189 TI 190
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 538 GNVG--LFDLHAVMAWIQDYITLFGGDPTRVVVMGQGSG 648
G +G + D ++++ + I +GGDP R+ ++GQ +G
Sbjct: 188 GTIGDMVSDASQGISYVCNNIASYGGDPNRIYLVGQSAG 226
>09_04_0421 + 17417851-17418840
Length = 329
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 326 DCLCLNVFAPKMP--GDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTA 484
D + ++ P P G R PV+ F HGG + GSA + + + I+V+
Sbjct: 59 DGVSARIYLPSTPASGYGRRLPVLVFFHGGGFCLGSAFDAATHGHANRLAARAGVIVVSV 118
Query: 485 QYRL 496
+YRL
Sbjct: 119 EYRL 122
>07_03_0659 + 20395422-20396765
Length = 447
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +2
Query: 365 GDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 496
G R PV+ ++HGG++ + SA Y ++ ++V+ +YRL
Sbjct: 78 GSRRRLPVILYIHGGSFCTESAFCRTYHRYAASLASRAGALVVSVEYRL 126
>01_01_0379 - 2956396-2957409
Length = 337
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAYGGQHLTQK-----DTILVTAQYRL 496
L L V+ P GD PV+ HGG Y G+ Q+ ++++A YRL
Sbjct: 64 LKLRVYRPPTAGDAERLPVLVCFHGGGYCLGTFEKPSFHCCCQRLASELRAVVLSADYRL 123
Query: 497 G 499
G
Sbjct: 124 G 124
>08_02_0997 + 23409932-23410894
Length = 320
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERGC-PVVFFVHGGNYKSGSAS-----AYGGQHLTQKDTILVTAQYR 493
L ++ P + G ER PVV ++HGG GSA+ + + + ++V+ YR
Sbjct: 56 LWARLYLPDLDGGERKLLPVVVYLHGGGLVVGSAADALEHGFANRLCARARALVVSVDYR 115
Query: 494 L 496
L
Sbjct: 116 L 116
>09_04_0410 + 17362751-17363698
Length = 315
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 496
L + ++ PK+ + PV+ F HGG + SA + Y ++V+ YRL
Sbjct: 58 LSVRLYLPKIQEPSKKLPVLVFFHGGGFLIESADSSTYHNYVNPFAAAAGVVVVSVDYRL 117
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 571 MAWIQDYITLFGGDPTRVVVMGQGSG 648
+A++ + I +GGDP R+ ++GQ +G
Sbjct: 209 IAFVCNNIASYGGDPERIYLVGQSAG 234
>09_04_0409 + 17359459-17360622
Length = 387
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +2
Query: 338 LNVFAPKMPGDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 496
+ +F PK+ + PVV F HGG + SA + Y ++V+ YRL
Sbjct: 134 VRLFLPKLQEPSKKLPVVVFFHGGAFFIESAGSETYHNYVNSLAAAAGVLVVSVDYRL 191
>06_01_0781 + 5846501-5847490
Length = 329
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERG-CPVVFFVHGGNYKSGSAS-----AYGGQHLTQKDTILVTAQYR 493
L +F P G +G PVV + HGG Y GSA+ +Y + + + V +YR
Sbjct: 63 LWARLFLPPGGGAPQGKLPVVVYYHGGAYVVGSAADPFTHSYLNGLVAEAGILAVALEYR 122
Query: 494 L 496
L
Sbjct: 123 L 123
>01_06_1701 - 39290537-39291077,39292110-39292801
Length = 410
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +2
Query: 374 RGCPVVFFVHGGNYKSGSASAYGGQHLTQK-----DTILVTAQYRL 496
R P+V HGG + SGS+S+ ++ D I+V YRL
Sbjct: 130 RRLPIVVQFHGGGFVSGSSSSAANDAFCRRVAKMCDAIVVAVGYRL 175
>08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,
5612419-5613608,5614505-5614660,5614742-5615041
Length = 1054
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 377 GCPVVFFVHGGNYKSGSASAYGGQHLTQKDTILVTAQYRLGSLGTLVLMKEMQ 535
G P+ +GGNY + + +GG H+ + + T LG G ++L ++++
Sbjct: 860 GIPIPSDEYGGNYGNHDYTIFGGDHMLDHLSDVRTLGL-LGHQGEMLLRRQLE 911
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,437
Number of Sequences: 37544
Number of extensions: 412184
Number of successful extensions: 1125
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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