Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00306
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08440.1 68414.m00933 hypothetical protein contains Pfam prof... 33 0.23
At5g15860.2 68418.m01856 expressed protein 31 0.54
At5g15860.1 68418.m01855 expressed protein 31 0.54
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 31 0.54
At1g26120.1 68414.m03188 esterase-related contains similaity to ... 31 0.71
At1g08430.1 68414.m00932 expressed protein contains Pfam profile... 31 0.71
At2g45610.1 68415.m05671 expressed protein low similarity to PrM... 30 1.2
At5g14310.1 68418.m01673 expressed protein low similarity to PrM... 29 2.2
At5g23530.1 68418.m02761 expressed protein contains similarity t... 29 3.8
At2g30590.1 68415.m03727 WRKY family transcription factor 28 5.0
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 28 6.6
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 28 6.6
At3g17360.1 68416.m02218 kinesin motor protein-related similar t... 28 6.6
At2g45600.1 68415.m05670 expressed protein low similarity to PrM... 28 6.6
At2g27240.1 68415.m03273 expressed protein contains Pfam profile... 28 6.6
>At1g08440.1 68414.m00933 hypothetical protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 501
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 192 EPPLGPRRFQRPXRQYLASELTPRDNAYRVRNETLTIPTDLLV 320
EP G RF+ P RQYLA R +AYR+ I +D+ +
Sbjct: 253 EPRHGQFRFRHPWRQYLAVGALLRQSAYRIDALNSNINSDMQI 295
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 571 MAWIQDYITLFGGDPTRVVVMGQGSG 648
++++ + I+ FGGDP R+ +MGQ +G
Sbjct: 212 ISFVCNNISAFGGDPNRIYLMGQSAG 237
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 571 MAWIQDYITLFGGDPTRVVVMGQGSG 648
++++ + I+ FGGDP R+ +MGQ +G
Sbjct: 212 ISFVCNNISAFGGDPNRIYLMGQSAG 237
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 571 MAWIQDYITLFGGDPTRVVVMGQGSG 648
++++ + I+ FGGDP R+ +MGQ +G
Sbjct: 207 ISFVCNNISAFGGDPNRIYLMGQSAG 232
>At1g26120.1 68414.m03188 esterase-related contains similaity to
esterase 6 GI:606998 from [Drosophila simulans] and
esterase GI:12584120 from [Sphingomonas elodea]
Length = 476
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +1
Query: 556 DLHAVMAWIQDYITLFGGDPTRVVVMGQGSG 648
D + ++++ ++I +GGDP R+ +MGQ +G
Sbjct: 258 DASSGISFVCNHIAEYGGDPDRIYLMGQSAG 288
>At1g08430.1 68414.m00932 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 493
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 192 EPPLGPRRFQRPXRQYLASELTPRDNAYRV 281
EPP G RF+ P +QY+A R AYR+
Sbjct: 256 EPPHGQFRFRHPWKQYVAVGALLRQCAYRI 285
>At2g45610.1 68415.m05671 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 324
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +2
Query: 275 PCPQRDPYYPDRFIGHEDCLCLNVFAP-KMPGDERG---CPVVFFVHGGN---YKSGSAS 433
PCP + D I HE + + +F P +P ++ P++ +HG Y + SA+
Sbjct: 40 PCPGKLAASKDVTINHETGVSVRIFRPTNLPSNDNAVARLPIIIHLHGSGWILYPANSAA 99
Query: 434 --AYGGQHLTQKDTILVTAQYRL 496
Q ++ I+V+ YRL
Sbjct: 100 NDRCCSQMASELTVIVVSVHYRL 122
>At5g14310.1 68418.m01673 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 446
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +2
Query: 347 FAPKMPGDERGCPVVFFVHGGNYKSGSASAYGGQHLTQK-----DTILVTAQYRL 496
+AP + R PV+ HGG + SGS+ + ++ D I++ YRL
Sbjct: 140 YAPSAKRNSRKLPVMLQFHGGGWVSGSSDSAANDFFCRRIAKVCDVIVLAVGYRL 194
>At5g23530.1 68418.m02761 expressed protein contains similarity to
PrMC3 [Pinus radiata] GI:5487873
Length = 335
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAY 439
L ++ P + GD+ PVV F HGG + S +AY
Sbjct: 73 LWFRLYTPHVSGDK--IPVVVFFHGGGFAFLSPNAY 106
>At2g30590.1 68415.m03727 WRKY family transcription factor
Length = 380
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 667 KVMQRSN-PNLGPLQQLELDHHQKALYSLESRPLQHVGQTNQRFQLHLFHQ 518
+ M SN P L P+QQ + Q+ + + Q Q ++R Q H HQ
Sbjct: 140 QTMPPSNYPTLFPVQQQQQQQQQQQQQEQQQQQQQQQQQFHERLQAHHLHQ 190
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSAS 433
L L ++ P + PVV F HGG + GS S
Sbjct: 60 LHLRLYKPISASNRTALPVVVFFHGGGFCFGSRS 93
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 332 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSAS 433
L L ++ P + PVV F HGG + GS S
Sbjct: 60 LHLRLYKPISASNRTALPVVVFFHGGGFCFGSRS 93
>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
KLP2 protein GB:CAA63826 from [Xenopus laevis]
Length = 2008
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 17 CSADLVSSRYSCCRRCAGVTSGTRCSCSFH 106
C + L SRYS + AG T +C C H
Sbjct: 534 CISSLEESRYSGTCKVAGETRQDKCHCQVH 563
>At2g45600.1 68415.m05670 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 329
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 338 LNVFAPKMPGDERGCPVVFFVHGGN---YKSGSASAYGG--QHLTQKDTILVTAQYRLGS 502
+ +F P+ E P++ + HGG Y + SA + + + TI+++ +YRL
Sbjct: 52 IRIFKPRNIPPESKLPILVYFHGGGFILYSAASAPFHESCTKMADRLQTIILSVEYRLAP 111
Query: 503 LGTLVLMKEMQLETLVCL 556
L E +E ++ L
Sbjct: 112 EHRLPAAYEDAVEAILWL 129
>At2g27240.1 68415.m03273 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 506
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 192 EPPLGPRRFQRPXRQYLASELTPRDNAYRV 281
EP G RF+ P +QYLA R AYR+
Sbjct: 279 EPGHGQFRFRHPWKQYLAVGELIRQCAYRI 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,799,910
Number of Sequences: 28952
Number of extensions: 312114
Number of successful extensions: 756
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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