Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00305
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 147 1e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 147 1e-36
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.57
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 28 0.99
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 28 0.99
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 0.99
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 28 0.99
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.0
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.0
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 4.0
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 26 5.3
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 26 5.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.0
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 7.0
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 9.2
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 147 bits (356), Expect = 1e-36
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 196
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 197 SSEALEAGRICCNKYLVK 250
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
Score = 136 bits (330), Expect = 2e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +1
Query: 256 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 435
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 436 SDRWKAQVIEALRRAKFKFPGRQKTTYQRS-GVSQ 537
D +A IEALRR ++KFPG+Q+ + G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 52.0 bits (119), Expect = 7e-08
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 477 CQVQVPRTSKDYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
CQ + P + VSKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 147 bits (356), Expect = 1e-36
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 196
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 197 SSEALEAGRICCNKYLVK 250
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
Score = 136 bits (329), Expect = 3e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +1
Query: 256 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 435
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 436 SDRWKAQVIEALRRAKFKFPGRQKTTYQRS-GVSQ 537
D +A IEALRR ++KFPG+Q+ + G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 52.0 bits (119), Expect = 7e-08
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 477 CQVQVPRTSKDYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
CQ + P + VSKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 41 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 217
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 218 G 220
G
Sbjct: 94 G 94
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 0.99
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 587 SEAAFFTQLLKLITFILCETPLL*YV 510
S+A FF ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 0.99
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 587 SEAAFFTQLLKLITFILCETPLL*YV 510
S+A FF ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 28.3 bits (60), Expect = 0.99
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 587 SEAAFFTQLLKLITFILCETPLL*YV 510
S+A FF ++L FI C +P+L Y+
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYL 260
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 0.99
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 587 SEAAFFTQLLKLITFILCETPLL*YV 510
S+A FF ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 98 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 217
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 119 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNSERI 265
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN +++
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKL 1086
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 132 RERPLTTFHCACTWCPTNMNS 194
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.0
Identities = 29/86 (33%), Positives = 40/86 (46%)
Frame = +3
Query: 54 KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 233
KI R+R+ SV + L S+S W R L H T + + A RL + VS
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391
Query: 234 ISTS*RTRKGSVPYPHETSPFPRYPH 311
+S T +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Frame = +1
Query: 247 KELGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQ 414
K+L + ++ L P R+ C G GK +G AR+ IG+
Sbjct: 87 KQLETAEQILKRILKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGR 145
Query: 415 PIMSVRSSDRWKAQVIEALRRAKFKFPGR 501
+ + K AL++A F PG+
Sbjct: 146 VLFEIGGDGMRKELAEHALKQAAFHLPGK 174
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 390 STLRLAKRTTHPSLEPISSS 331
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 502 QKTTYQRSGVSQSMNVMSLRSCVKKAASLMTA 597
Q +YQR + + +V+ RSC+ KA +L+ A
Sbjct: 304 QTFSYQRHQIYKEEDVVLARSCIIKARTLIGA 335
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 130 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPH 17
L Q++++ L + T T P +R V SC+P H
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKH 445
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 217 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 101
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 259 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 363
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -1
Query: 233 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 78
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 77 SISDTVYFCSTGSIL 33
SD + + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 84 VGVYLIPRSVSSIWV 128
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 224 ICCNKYLVKNSERISSISA*DFTL 295
ICC KY V R + I FTL
Sbjct: 9 ICCAKYFVNTKSRFNEILPPRFTL 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,339
Number of Sequences: 5004
Number of extensions: 62759
Number of successful extensions: 217
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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