Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00305
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 142 3e-34
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 140 9e-34
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 138 5e-33
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.0
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.4
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 7.2
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 9.5
09_06_0319 - 22293869-22293906,22294539-22295808 27 9.5
08_02_1581 - 28004060-28004449,28004730-28004888,28004933-280050... 27 9.5
06_02_0084 - 11547820-11548773 27 9.5
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 9.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 142 bits (343), Expect = 3e-34
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = +1
Query: 247 KELGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 426
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 427 VRSSDRWKAQVIEALRRAKFKFPGRQKTTYQR 522
VR + EALRRAKFKFPGRQK + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 138 bits (333), Expect = 5e-33
Identities = 60/80 (75%), Positives = 68/80 (85%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 196
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 197 SSEALEAGRICCNKYLVKNS 256
SSEALEA RI CNKY+ KN+
Sbjct: 61 SSEALEAARIACNKYMTKNA 80
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +3
Query: 492 PRTSKDYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
P K S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 140 bits (339), Expect = 9e-34
Identities = 66/92 (71%), Positives = 72/92 (78%)
Frame = +1
Query: 247 KELGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 426
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 427 VRSSDRWKAQVIEALRRAKFKFPGRQKTTYQR 522
VR EALRRAKFKFPGRQK R
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQKIIESR 165
Score = 116 bits (278), Expect = 2e-26
Identities = 50/73 (68%), Positives = 60/73 (82%)
Frame = +2
Query: 38 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 217
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 218 GRICCNKYLVKNS 256
RI CNKY+ K++
Sbjct: 64 ARIACNKYMTKSA 76
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 492 PRTSKDYVSKKWGFTKYERDEFEKLREEGRLANDG 596
P K S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 138 bits (333), Expect = 5e-33
Identities = 64/90 (71%), Positives = 72/90 (80%)
Frame = +1
Query: 247 KELGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 426
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 427 VRSSDRWKAQVIEALRRAKFKFPGRQKTTY 516
VR D A EALRRAKFKFPGRQ+ +
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIF 474
Score = 131 bits (316), Expect = 5e-31
Identities = 56/76 (73%), Positives = 65/76 (85%)
Frame = +2
Query: 29 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 208
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 209 LEAGRICCNKYLVKNS 256
LEA RI CNKY+ K++
Sbjct: 372 LEAARIACNKYMAKHA 387
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 492 PRTSKDYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 626
P + S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 419 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 327
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 140 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 250
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 373 GKPQGTVARVRIGQPIMSVRSSD 441
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 9 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 179
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 246 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 145
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 373 GKPQGTVARVRIGQPIMSVRSSD 441
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_1581 -
28004060-28004449,28004730-28004888,28004933-28005044,
28005160-28005236,28005525-28006076
Length = 429
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 585 RGGLLHAASQTHHVHTL 535
RGGL ASQ HH+H L
Sbjct: 48 RGGLKILASQAHHIHEL 64
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 322 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 450
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 158 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 42
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,315,538
Number of Sequences: 37544
Number of extensions: 466330
Number of successful extensions: 1294
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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