Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00305
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   147   7e-36
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    31   0.92 
Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   4.9  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    28   6.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   8.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   8.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   8.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  147 bits (356), Expect = 7e-36
 Identities = 65/79 (82%), Positives = 69/79 (87%)
 Frame = +2

Query: 17  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 196
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 197 SSEALEAGRICCNKYLVKN 253
           SSEALEA RIC NKY+VKN
Sbjct: 61  SSEALEAARICANKYMVKN 79



 Score =  129 bits (311), Expect = 2e-30
 Identities = 61/86 (70%), Positives = 67/86 (77%)
 Frame = +1

Query: 247 KELGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 426
           K  GKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S
Sbjct: 78  KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137

Query: 427 VRSSDRWKAQVIEALRRAKFKFPGRQ 504
           +R  +      IEA RRAKFKFPGRQ
Sbjct: 138 MRIKEGNVKHAIEAFRRAKFKFPGRQ 163



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 23/39 (58%), Positives = 33/39 (84%)
 Frame = +3

Query: 516 SKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 632
           S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL
Sbjct: 168 SRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPL 206


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 401 FALDSPSCPCALVTGGKHKSSRLCAVPSSSSPDVKRLR 514
           F+LDSP+ P +L  GG     + C    + SP + R+R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLRMR 73


>Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical
           protein F36A2.4 protein.
          Length = 618

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 486 QVPRTSKDYVSKKWGFTKYERDEFEKLRE 572
           ++ + +KDYV K W   K +RD+++ + +
Sbjct: 54  KIEQNAKDYVDKLWSVAKRDRDKYKNVED 82


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 361 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 507
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 31   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 120
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1042 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 31   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 120
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 31   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 120
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 447 PPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 328
           P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 47  PVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 380 GLPNAPRIPVWSLSAPA 330
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 77  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 223
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 531 FTKYERDEFEKLREEGRLANDGCIVQYR 614
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 261 LSEFFTRYLLQQIRPA--SKASELSCSYSSDTKCTHSGKSSTVALFLP 124
           L EFF  +L Q+IR A  S  S  S S SS +    S  SS+ + + P
Sbjct: 212 LMEFFRYFLTQRIRHARDSSGSHESYSGSSSSSSYSSSDSSSYSSYTP 259


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 139 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 38
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 139 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 38
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 139 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 38
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,415
Number of Sequences: 27780
Number of extensions: 368316
Number of successful extensions: 1080
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)