Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00303X
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    29   0.44 
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   1.4  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   1.4  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    27   2.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   4.1  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    25   5.5  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   7.2  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   9.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.5  

>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 222 KGNFSQEASLTENVTDKGQHRQPTSFVESSPRPV-EICTDATRYNTRKVKRTTKSHV 389
           + N SQE SL  N  +K   +QP   ++ S  P+ +  T A   +T  V      HV
Sbjct: 136 QSNNSQELSLMNNAYNKSSAQQPNLLLQPSYIPMTQTATTAVNNSTNYVNPAPLQHV 192


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/70 (18%), Positives = 29/70 (41%)
 Frame = +3

Query: 183 IMQFSWMLLKLYGKGNFSQEASLTENVTDKGQHRQPTSFVESSPRPVEICTDATRYNTRK 362
           I+  SW  + +Y K    +  ++ +       + QP   +E S   VE  + ++  + + 
Sbjct: 117 ILATSWKQISIYVKDEGLRTETIVKKTEHADSNHQPAVSIEESKEAVESTSQSSEISFKL 176

Query: 363 VKRTTKSHVY 392
           +K     H +
Sbjct: 177 IKVIEGHHTF 186


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 319 QSRSVQMRPDTTRGR*NVRPSHTSTARLHRERSGHEPAGS 438
           + +S  +   +T G+ NV PS+ ST  L    S H P  S
Sbjct: 57  RKKSAPLHCPSTNGKTNVLPSYASTPSLSPMTSSHFPYAS 96


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 300 VESSPRPVEICTDATRYNTRKVKRTTKSHV 389
           ++SSP P+E+    T +  + VK   K H+
Sbjct: 662 LKSSPSPIELTEQETEFVVKVVKHVFKDHL 691


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 396 KATSRTKWT*TRRIVPGELRLLHADP-EVRLLRRPALHPQKNLRRQDHQL 542
           +A  + KW  +RR++ G L LL  D  +   +      P   L +  H++
Sbjct: 226 RAKKKIKWATSRRLISGSLVLLSNDDFQTFRIGTVCARPLSGLNKHPHEI 275


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 295 DVGCLCCPLSVTFSVRLASCEKFPFPYNLSSIHE 194
           + GCL  P    F     SCEK      L++I+E
Sbjct: 337 NAGCLSLPQLFKFITEEGSCEKEAMKTRLNAIYE 370


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 264 TDKGQHRQPTSFVESSPRPVEICTDATRYNTR 359
           T+   H+  T F+E  P P +  T  TR +TR
Sbjct: 54  TNVSSHQSATKFIEPEPSPTK-KTKLTRRDTR 84


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 371 TFYLPRVVSGRICTDLDWPRRGLHERRWLPVLSFVRNVLSQTRLL*EVSFSVQ 213
           TF          CT L+      H R  L + +F + +L Q+ +L E+   VQ
Sbjct: 31  TFRQSSPAKNATCTTLNHLLSAQHTRPQLNIHNFGKEILDQSIILPEILICVQ 83


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 282 RQPTSFVESSPRPVEICTDATRYNTRKVKRTTKSHVYCKATS 407
           RQP  F    PR  EIC   T YN  +V      H   K  S
Sbjct: 178 RQPLFF---QPRKTEICIAITMYNEDEVLFARTMHSVMKNIS 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,366
Number of Sequences: 5004
Number of extensions: 42137
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)