Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00303X
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0092 + 726892-727247,727338-727347 31 0.59
11_01_0092 + 683869-684224,684315-684324 31 0.59
04_01_0573 + 7436146-7436701,7436786-7437204 31 0.59
12_01_0653 + 5521635-5522387 29 1.8
07_01_0544 + 4012457-4012796,4012897-4013069 29 2.4
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 29 3.2
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 28 5.5
06_01_1143 - 9554338-9554983,9555004-9555746 28 5.5
02_05_0455 - 29154374-29155136,29155257-29156455,29156904-291570... 28 5.5
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 27 9.7
>12_01_0092 + 726892-727247,727338-727347
Length = 121
Score = 31.1 bits (67), Expect = 0.59
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -3
Query: 504 AELVVVAAVPLGQRVVAAVLLARSCGFMSTSFSM*PCSRRVTWSYVLPSS-CCIGSHLYR 328
A + VVAA + +R AAV SCG +++S + PC V PSS CC G
Sbjct: 12 ALVAVVAAAVVAERASAAV----SCGDVTSSIA--PCLSYVMGRESSPSSSCCSGVRTLN 65
Query: 327 SRLAEERTPRTTLAACV 277
+ A R T +C+
Sbjct: 66 GK-ASSSADRRTACSCL 81
>11_01_0092 + 683869-684224,684315-684324
Length = 121
Score = 31.1 bits (67), Expect = 0.59
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -3
Query: 504 AELVVVAAVPLGQRVVAAVLLARSCGFMSTSFSM*PCSRRVTWSYVLPSS-CCIGSHLYR 328
A + VVAA + +R AAV SCG +++S + PC V PSS CC G
Sbjct: 12 ALVAVVAAAVVAERASAAV----SCGDVTSSIA--PCLSYVMGRESSPSSSCCSGVRTLN 65
Query: 327 SRLAEERTPRTTLAACV 277
+ A R T +C+
Sbjct: 66 GK-ASSSADRRTACSCL 81
>04_01_0573 + 7436146-7436701,7436786-7437204
Length = 324
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 225 LFRTI*AASTKTALWRIPLSRPGLWCCKCRKSID-AGTSAMC 103
+++T A K W++ L R W KCR+ I+ GT MC
Sbjct: 68 IWKTKVQAKVKIFAWKLALDRLPTWNNKCRRKIERQGTCQMC 109
>12_01_0653 + 5521635-5522387
Length = 250
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 453 RLLHADPEVRLLRRPALHPQKNLRRQDHQL 542
R L D + + R P LHPQ N RRQ HQL
Sbjct: 209 RSLVTDVQPAMQRLPLLHPQLNQRRQ-HQL 237
>07_01_0544 + 4012457-4012796,4012897-4013069
Length = 170
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -3
Query: 528 AAASFFAGAELVVVAAVPLGQRVVAAVLLARSCGFMSTSFSM*PCSRRVTWSYVLPSSCC 349
A ++ A VVV A+ G AA + + G T SM PC +T + PS+ C
Sbjct: 3 ARVAWIGAAAAVVVVALMAGG--AAAQPPSSTSGCTQTLLSMSPCLNYLTGNETAPSASC 60
Query: 348 IG 343
G
Sbjct: 61 CG 62
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 288 PTSFVESSPRPVEICTDATRYNTRKVKRTTKSHVYCKATSRTKWT*TRRIVPGELRLLHA 467
PT SSP ++ DA + +K++ S K +W + G++R+ H
Sbjct: 248 PTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRRRAKKKRTLQWEGV-YVSLGDVRMGHV 306
Query: 468 DPEV 479
DP V
Sbjct: 307 DPTV 310
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 225 LFRTI*AASTKTALWRIPLSRPGLWCCKCRKSID 124
L++T A K W++ L R W KCR+ I+
Sbjct: 190 LWKTKVQAKIKIFAWKLALDRLPTWVNKCRRKIE 223
>06_01_1143 - 9554338-9554983,9555004-9555746
Length = 462
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 225 LFRTI*AASTKTALWRIPLSRPGLWCCKCRKSID 124
L++T A K W++ L R W KCR+ I+
Sbjct: 134 LWKTRVQAKIKIFAWKLALDRLPTWVNKCRRKIE 167
>02_05_0455 -
29154374-29155136,29155257-29156455,29156904-29157011,
29157129-29157314,29157761-29157859,29159613-29159773,
29160856-29160913
Length = 857
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 132 IYDIYNTIALAEIKGYAIMQFSWMLLKLYGKGNFSQEASLTENVTDKGQHRQP-TSFVES 308
I + + I+ + K +++F L+K YGK + EN+ + Q P +SFV
Sbjct: 270 IKKLLDKISGTDPKKEGVLKFLLYLVKKYGKNIKPETGERNENMQSESQSSTPSSSFVSD 329
Query: 309 SPRP 320
+ P
Sbjct: 330 TSTP 333
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 284 AANVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQG 400
AAN+V ++ + + +L + ++ E+G DQ RL G
Sbjct: 9 AANIVDSIVDAIADNLPKQKSVRFEDGSISDQAKRLFGG 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,801
Number of Sequences: 37544
Number of extensions: 324399
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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