Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00303X
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.26 
SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)                     31   0.61 
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)                  30   1.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_49059| Best HMM Match : UPF0175 (HMM E-Value=5.9)                   28   4.3  
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)               28   4.3  
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_35020| Best HMM Match : Cu-oxidase_2 (HMM E-Value=1.1e-09)          28   5.7  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   7.5  
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)                  27   7.5  
SB_47552| Best HMM Match : CUT (HMM E-Value=9.6)                       27   7.5  
SB_36724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)          27   9.9  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  27   9.9  
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)                27   9.9  
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +3

Query: 231 FSQEASLTENVTDKGQHRQPTSFVESSPRP----VEICTDATRYNTRKV---KRTTKSHV 389
           F++E    +N+TD  +H +PT+ V  +  P     EIC D   +N R V        S  
Sbjct: 401 FAKEHEYIDNLTDVVKHIKPTTIVGVAAVPGAFTEEICRDMASFNDRPVIFALSNPTSKA 460

Query: 390 YCKATSRTKWT*TRRI 437
            C A +   WT  R I
Sbjct: 461 ECTALNCYTWTEGRGI 476


>SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)
          Length = 474

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 246 SLTENVTDKGQHRQPTS-FVESSPRPVEICTDATRYNTRKVKRTTKSHVYCKATSRTKWT 422
           S T N+ +   H   T     S  R  ++    TR  T    R T+ H +  ATSRT+ +
Sbjct: 65  SRTRNIANTQPHEHATQKHATSRTRDSQLWNSRTRNVTNTRLRNTQHHEHKHATSRTRDS 124

Query: 423 *TRRI 437
            TR I
Sbjct: 125 ETRNI 129


>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
          Length = 534

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = -2

Query: 421 VHFVLDVALQ*TCDLVVRFTFLVLYRVASVQISTG-RGEDSTNDVGCLCCPLSVTFSVRL 245
           VHF   ++    C L   F FL ++ + S+++S G    + ++  GC  C + V F V  
Sbjct: 136 VHFAKYLSFS-GCSLCRVFVFLSVFTLLSIRLSQGVHFVEYSSFSGCSLCGVFVFFRVFT 194

Query: 244 ASCEKFPFPYNL--SSIHENCIMAYPFISARAMVL 146
            SC +     +L   S    C +   F+  R   L
Sbjct: 195 LSCIRLSQGVHLIEYSSFSGCSLCRVFVFFRVFTL 229


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +1

Query: 406  RERSGHEPAGSC--QENC--GYYTLTQRY--GCYDDQLCTRKKT 519
            R R  HE A SC  + +C   YY   Q +   CYDD LC    T
Sbjct: 4769 RTRDVHECARSCCGKPSCDLAYYVFQQCFLVKCYDDYLCATTHT 4812


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 424 EPAGSCQENCGYYTLTQRYGCYDDQLCTRK 513
           EP GSC    G Y +     CYD + C  K
Sbjct: 43  EPGGSCSVEAG-YVIDNNGMCYDGRFCVDK 71


>SB_49059| Best HMM Match : UPF0175 (HMM E-Value=5.9)
          Length = 159

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 360 KVKRTTKSHVYCKATSRTKWT*TRRIV 440
           K+ R T++HVYC  T R+     R++V
Sbjct: 9   KLNRETQAHVYCGTTLRSSLNRARKVV 35


>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
          Length = 527

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = +1

Query: 295 RSWSPLLGQSRSVQMRPDTTRGR*NVRPSHTSTARLHRERSGHEPAGSCQENCGYYTLTQ 474
           R  S  L  + S+Q   D  RG  N     T   R   E    +    CQ   GY+ L Q
Sbjct: 127 RERSLSLTTTTSLQTEDDRRRGSQNSSRYKTELCRPFEESGTCKYGDKCQFAHGYHELRQ 186

Query: 475 --RYGCYDDQLCTRKKTCG 525
             R+  Y  +LC    T G
Sbjct: 187 LARHPKYKTELCRTFHTIG 205


>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 295 RSWSPLLGQSRSVQMRPDTTRGR*NVRPS 381
           RS SP+ GQS S+  R D+T G  +VRP+
Sbjct: 218 RSKSPMPGQSLSLPQRSDSTEGL-SVRPA 245


>SB_35020| Best HMM Match : Cu-oxidase_2 (HMM E-Value=1.1e-09)
          Length = 179

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 174 GYAIMQFS-----WMLLKLYGKGNFSQEASLTENVTDKGQHRQPTSF 299
           GYA+++F      + LL  +   + S+  SLT N+T+KG    P  F
Sbjct: 87  GYAVLRFKSNNPGYWLLHCHQMLHLSEGMSLTLNITEKGLPPPPAGF 133


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
 Frame = +1

Query: 163  PR*RDTP*CSFRGCCSNCTEKETSHXXXXXXXXXXXXDNT-GSQRRSWSPLLGQSRSVQM 339
            P   D   C F GC + C ++E               D +    R +W+  LG  R++ +
Sbjct: 1458 PECPDAAKCCFSGCRNTCVQREKDDICSRVIDLAIAVDTSMNMDRCTWTRNLGFLRALAL 1517

Query: 340  R----PDTTR 357
            +    PDT R
Sbjct: 1518 KFAVSPDTVR 1527


>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
          Length = 1803

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 424  EPAGSCQENCGYYTLTQRYGCYDDQLCTRK 513
            EP GSC    G Y +     CYD + C  K
Sbjct: 1467 EPGGSCSVEAG-YVIDNNGMCYDVRFCVDK 1495


>SB_47552| Best HMM Match : CUT (HMM E-Value=9.6)
          Length = 156

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 177 IPLSRPGLWCCKCRKSIDAGTSAMCTRPCLXPELPRRFAA 58
           +PL+ P LW   C   + AG    C  P +  +   RFAA
Sbjct: 112 VPLAVP-LWMLNCPLGLVAGQHHDCPAPVITEQPDERFAA 150


>SB_36724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 177 IPLSRPGLWCCKCRKSIDAGTSAMCTRPCLXPELPRRFAA 58
           +PL+ P LW   C   + AG    C  P +  +   RFAA
Sbjct: 5   VPLAVP-LWMLNCPLGLVAGQHHDCPAPVITEQPDERFAA 43


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 419 PLRSRCSLAVDV*LGRTFYLPRVVSGRICTD 327
           PL  R S+   V + RTF LPR+ +GR   D
Sbjct: 319 PLMLRMSVVSPVSMVRTFQLPRMRAGRFVFD 349


>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
          Length = 396

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 248 SD*ERYGQRTTQAANVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQGYIENE 415
           +D E + +R  Q    V  V+     DLY C     E  K  + V  L Q Y+++E
Sbjct: 263 TDKEMHQER--QKVRDVEAVVKRFKTDLYNCVGFIQEPKKLKENVKALYQKYVQDE 316


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 248 SD*ERYGQRTTQAANVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQGYIENE 415
           +D E + +R  Q    V  V+     DLY C     E  K  + V  L Q Y+++E
Sbjct: 709 TDKEMHQER--QKVRDVEAVVKRFKTDLYNCVGFIQEPKKLKENVKALYQKYVQDE 762


>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
          Length = 1178

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 304  SPLLGQSRSVQMRPDTTRGR*NVRPSHTSTARLHRERSGHEPAG-SCQENCGYYTLTQRY 480
            SP+ G  + +     TTRG    RP+ T+T    R   G+   G S  E C    L    
Sbjct: 885  SPINGNQQQIVDSSRTTRGETEPRPAQTATENTTR---GNATRGRSLIELCSESNLRIAN 941

Query: 481  GCYDDQLCTRKKTC 522
            G     L T KKTC
Sbjct: 942  GRIIGDL-TGKKTC 954


>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
 Frame = +3

Query: 72  EEVQXGGTDVCTLQMSPHQLIYDIYNTIALAEIKGYAIMQFSWMLLKLYGKGNFSQEASL 251
           E VQ  G+  CT  M+      D+  T  L+   GYA M F++   ++    + +   S 
Sbjct: 26  EPVQCTGSHDCTFLMTYQDNGSDV--TFELSAKAGYAAMGFNYKQ-EMDATDSITCSTSA 82

Query: 252 TENVTDKG---QHRQPTSFVESSPRPVEICTDATRYNTRKVK 368
           +  V  +     H +PT +   S    +   D T+Y+TR  +
Sbjct: 83  SGAVEIRRYYLDHHRPTRYDIVSTTRYDTRYDTTQYDTRSTR 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,791,772
Number of Sequences: 59808
Number of extensions: 373821
Number of successful extensions: 1055
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)