Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00303X
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z73104-5|CAI59114.1|  439|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z73104-4|CAA97435.2|  547|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z69788-5|CAD44117.1|  314|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 153 IALAEIKGYAIMQFSWMLLKLYGKGNFSQEASLTENVTDKGQHRQPTS 296
           I  + IK  +I+ + +  LKLYG  ++  EA + + + +  Q    TS
Sbjct: 669 ILTSVIKELSIVLYKFKKLKLYGSTSYQMEAEINDLINEMMQFSNCTS 716


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 153 IALAEIKGYAIMQFSWMLLKLYGKGNFSQEASLTENVTDKGQHRQPTS 296
           I  + IK  +I+ + +  LKLYG  ++  EA + + + +  Q    TS
Sbjct: 669 ILTSVIKELSIVLYKFKKLKLYGSTSYQMEAEINDLINEMMQFSNCTS 716


>Z73104-5|CAI59114.1|  439|Caenorhabditis elegans Hypothetical
           protein K08D8.4b protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 243 ASLTENVTDKGQHRQPTSFVESSP-RPVEICTDATRYNTRKVKRTTKSHV 389
           ++LT  +    +   PT+F   +P     I T ATR  T++ + TTKS +
Sbjct: 373 STLTTKIITSTKSDSPTTFPTLAPGASTTIGTGATRGTTQRYESTTKSGI 422


>Z73104-4|CAA97435.2|  547|Caenorhabditis elegans Hypothetical
           protein K08D8.4a protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 243 ASLTENVTDKGQHRQPTSFVESSP-RPVEICTDATRYNTRKVKRTTKSHV 389
           ++LT  +    +   PT+F   +P     I T ATR  T++ + TTKS +
Sbjct: 481 STLTTKIITSTKSDSPTTFPTLAPGASTTIGTGATRGTTQRYESTTKSGI 530


>Z69788-5|CAD44117.1|  314|Caenorhabditis elegans Hypothetical
           protein F09A5.4d protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 384 VTWSYVLPSSCCIGSHLYRSRLAEERTPRTTLAACVV 274
           V +S+  PSS    S L RSR ++ERT  T      V
Sbjct: 17  VYYSFYFPSSSSSSSFLPRSRRSKERTATTGTGGAAV 53


>U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical
           protein F07C4.10 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 436 SCQENCGYYTLTQRYGC 486
           SC +NCGY  LT  Y C
Sbjct: 103 SCPKNCGYCCLTPDYKC 119


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 232 KFPFPYNLSSIHENCIMAYPFISA 161
           +FP PY++ + H N +  Y F SA
Sbjct: 122 RFPDPYSVYTKHNNTLFTYIFFSA 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,574
Number of Sequences: 27780
Number of extensions: 257849
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)