Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00303X
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/19 (42%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 147 NTIA-LAEIKGYAIMQFSW 200
           NT A ++++ GYA++ +SW
Sbjct: 186 NTYAYISDLSGYALVVYSW 204


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 119 PASIDLRHLQHHSP 160
           PA+I + H  HH P
Sbjct: 454 PAAIQIGHTPHHHP 467


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 492 RPALHPQKNLRRQDHQ 539
           +P +HP++  + Q HQ
Sbjct: 218 QPGMHPRQQQQAQQHQ 233


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 264  TDKGQHRQPTSFVESSP 314
            T +GQ RQ + F +SSP
Sbjct: 1243 TLRGQERQRSLFKDSSP 1259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,960
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)